C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stimulator of chondrogenesis 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164106 SCRG1 9606 - 4:173384701-173406380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296506 SCRG1-001 173384701-173399536 protein_coding
  ENST00000512188 SCRG1-002 173388162-173406380 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296506ENST00000512188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296506 0.084±0.00 0.589±0.00 0.030±0.00 3.191±1.61 0.158±0.06 0.381±0.01 0.087±0.00 0.216±0.00 0.326±0.30 0.167±0.00 0.077±0.02 0.176±0.12 0.039±0.01 1.133±0.22
ENST00000512188 N/A 2.231±0.00 N/A 26.075±0.00 N/A 3.091±0.00 N/A 0.820±0.00 N/A 0.744±0.00 N/A 0.416±0.26 0.031±0.01 5.159±3.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VG CIL_0008VG_0001 VISTA 4:173198350-173802625
CIL_0008BZ CIL_0008BZ_0001 VISTA 4:173215162-173815719
CIL_00080O CIL_00080O_0001 VISTA 4:173380161-173984834

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 TAS extracellular space
GO:0007399 TAS nervous system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031610 Scrg1 scrapie responsive gene 1 protein_coding Mus_musculus

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