C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00080O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2116 VISTA 9606 4:173380161-173984834
GeneTranscriptPositionBiotype
ENSG00000164106 (SCRG1)
stimulator of chondrogenesis 1 		ENST00000296506 (SCRG1-001) 173384701-173399536 protein_coding
ENST00000512188 (SCRG1-002) 173388162-173406380 nonsense_mediated_decay
ENSG00000164107 (HAND2)
heart and neural crest derivatives expressed 2 		ENST00000359562 (HAND2-001) 173526091-173530229 protein_coding
ENST00000503024 (HAND2-006) 173524969-173528912 nonsense_mediated_decay
ENST00000505300 (HAND2-003) 173528079-173530206 processed_transcript
ENST00000621866 (HAND2-201) 173526501-173529289 protein_coding
ENSG00000213370 (RANP6)
RAN, member RAS oncogene family pseudogene 6 		ENST00000413691 (RANP6-001) 173633728-173634371 processed_pseudogene
ENSG00000234801 (MORF4)
mortality factor 4 		ENST00000447135 (MORF4-001) 173615936-173616906 processed_pseudogene
ENSG00000242882 (RPL5P11)
ribosomal protein L5 pseudogene 11 		ENST00000498068 (RPL5P11-001) 173419245-173420137 processed_pseudogene
ENSG00000250043 (RP11-161D15.2)
 ENST00000502956 (RP11-161D15.2-001) 173896394-173911895 lincRNA
ENST00000515825 (RP11-161D15.2-002) 173877471-173913252 lincRNA
ENSG00000250708 (RP11-161D15.1)
 ENST00000509968 (RP11-161D15.1-002) 173897252-173929431 lincRNA
ENST00000512263 (RP11-161D15.1-001) 173897273-173929525 lincRNA
ENSG00000251216 (RP11-161D15.3)
 ENST00000503325 (RP11-161D15.3-002) 173982619-173990861 lincRNA
ENST00000511291 (RP11-161D15.3-001) 173924207-173990851 lincRNA
ENSG00000261646 (RP11-489G11.3)
 ENST00000563631 (RP11-489G11.3-001) 173467833-173470041 lincRNA
ENSG00000261672 (RP11-475B2.1)
 ENST00000561655 (RP11-475B2.1-001) 173593672-173594556 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00080O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2116 VISTA 10090 8:56891052-57495815
GeneTranscriptPositionBiotype
ENSMUSG00000031609 (Sap30)
sin3 associated polypeptide 		ENSMUST00000034022 (Sap30-001) 57482707-57487860 protein_coding
ENSMUSG00000031610 (Scrg1)
scrapie responsive gene 1 		ENSMUST00000034023 (Scrg1-201) 57455923-57477585 protein_coding
ENSMUSG00000038193 (Hand2)
heart and neural crest derivatives expressed transcript 2 		ENSMUST00000040104 (Hand2-001) 57320983-57324517 protein_coding
ENSMUSG00000096917 (2500002B13Rik)
RIKEN cDNA 2500002B13 gene 		ENSMUST00000180690 (2500002B13Rik-201) 57488054-57508877 lincRNA
ENSMUSG00000097910 (5033428I22Rik)
RIKEN cDNA 5033428I22 gene 		ENSMUST00000181638 (5033428I22Rik-201) 57332118-57340682 lincRNA
ENSMUSG00000100348 (RP24-459A4.3)
predicted gene 28063 		ENSMUST00000187718 (RP24-459A4.3-001) 57321005-57324233 antisense
ENSMUST00000189098 (RP24-459A4.3-002) 57320987-57324233 antisense
ENSMUSG00000100510 (RP24-459A4.1)
expressed sequence AV026068 		ENSMUST00000185635 (RP24-459A4.1-003) 57314288-57320748 retained_intron
ENSMUST00000185793 (RP24-459A4.1-002) 57304265-57320404 retained_intron
ENSMUST00000185946 (RP24-459A4.1-006) 57304265-57320325 lincRNA
ENSMUST00000186214 (RP24-459A4.1-008) 57304271-57305358 lincRNA
ENSMUST00000186386 (RP24-459A4.1-001) 57304265-57320859 lincRNA
ENSMUST00000187461 (RP24-459A4.1-005) 57306947-57320767 retained_intron
ENSMUST00000189143 (RP24-459A4.1-004) 57305243-57320830 retained_intron
ENSMUST00000189169 (RP24-459A4.1-007) 57304265-57320735 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080O_0001ENSG00000164106ENST00000296506ENST00000512188ENSG00000164107ENST00000359562ENST00000503024ENST00000505300ENST00000621866ENSG00000213370ENST00000413691ENSG00000234801ENST00000447135ENSG00000242882ENST00000498068ENSG00000250043ENST00000502956ENST00000515825ENSG00000250708ENST00000509968ENST00000512263ENSG00000251216ENST00000503325ENST00000511291ENSG00000261646ENST00000563631ENSG00000261672ENST00000561655CIL_00080O_0002ENSMUSG00000031609ENSMUST00000034022ENSMUSG00000031610ENSMUST00000034023ENSMUSG00000038193ENSMUST00000040104ENSMUSG00000096917ENSMUST00000180690ENSMUSG00000097910ENSMUST00000181638ENSMUSG00000100348ENSMUST00000187718ENSMUST00000189098ENSMUSG00000100510ENSMUST00000185635ENSMUST00000185793ENSMUST00000185946ENSMUST00000186214ENSMUST00000186386ENSMUST00000187461ENSMUST00000189143ENSMUST00000189169
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080O_0001ENSG00000164106ENST00000296506ENST00000512188ENSG00000164107ENST00000359562ENST00000621866ENSG00000213370ENST00000413691ENSG00000234801ENST00000447135ENSG00000242882ENST00000498068ENSG00000250043ENST00000502956ENST00000515825ENSG00000250708ENST00000509968ENST00000512263ENSG00000251216ENST00000503325ENST00000511291ENSG00000261646ENST00000563631ENSG00000261672ENST00000561655CIL_00080O_0002ENSMUSG00000031609ENSMUST00000034022ENSMUSG00000031610ENSMUST00000034023ENSMUSG00000038193ENSMUST00000040104ENSMUSG00000096917ENSMUST00000180690ENSMUSG00000097910ENSMUST00000181638ENSMUSG00000100348ENSMUST00000187718ENSMUST00000189098ENSMUSG00000100510ENSMUST00000185635ENSMUST00000185793ENSMUST00000185946ENSMUST00000186214ENSMUST00000186386ENSMUST00000187461ENSMUST00000189143ENSMUST00000189169
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164106 ENST00000296506 0.084±0.00 0.589±0.00 0.030±0.00 3.191±1.61 0.158±0.06 0.381±0.01 0.087±0.00 0.216±0.00 0.326±0.30 0.167±0.00 0.077±0.02 0.176±0.12 0.039±0.01 1.133±0.22
ENST00000512188 N/A 2.231±0.00 N/A 26.075±0.00 N/A 3.091±0.00 N/A 0.820±0.00 N/A 0.744±0.00 N/A 0.416±0.26 0.031±0.01 5.159±3.49
ENSG00000164107 ENST00000359562 0.333±0.00 N/A N/A N/A 0.641±0.00 41.808±0.00 13.836±7.37 0.693±0.64 3.361±2.15 N/A N/A 5.376±2.90 14.338±7.46 1.533±1.25
ENST00000503024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621866 N/A 0.448±0.00 N/A N/A 1.018±0.00 1.653±0.00 N/A N/A 2.561±0.00 0.483±0.00 0.095±0.00 7.886±6.35 29.715±15.35 N/A
ENSG00000213370 ENST00000413691 0.020±0.00 N/A N/A 0.042±0.00 0.041±0.00 0.038±0.00 0.019±0.00 N/A 0.036±0.00 0.018±0.00 0.036±0.00 N/A N/A N/A
ENSG00000234801 ENST00000447135 0.084±0.00 0.037±0.00 N/A 0.104±0.08 0.132±0.00 0.034±0.00 0.011±0.00 0.207±0.00 0.022±0.00 0.011±0.00 0.152±0.00 0.076±0.00 0.039±0.00 0.056±0.00
ENSG00000242882 ENST00000498068 0.054±0.00 0.137±0.00 N/A 0.266±0.23 0.053±0.00 0.453±0.39 0.052±0.00 0.068±0.00 0.112±0.10 0.125±0.04 0.074±0.00 0.042±0.03 N/A 0.025±0.00
ENSG00000250043 ENST00000502956 N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.028±0.00 0.129±0.10
ENST00000515825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.01
ENSG00000250708 ENST00000509968 N/A N/A N/A 0.093±0.00 N/A 0.084±0.00 N/A N/A N/A N/A N/A 0.203±0.00 N/A 1.462±1.34
ENST00000512263 N/A N/A N/A N/A N/A 0.153±0.00 0.792±0.00 N/A N/A 0.470±0.00 N/A 0.585±0.17 N/A 0.929±0.00
ENSG00000251216 ENST00000503325 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511291 N/A N/A N/A 0.006±0.00 N/A 0.056±0.00 0.146±0.08 N/A 0.005±0.00 0.013±0.01 N/A 0.032±0.00 0.119±0.06 0.284±0.23
ENSG00000261646 ENST00000563631 0.045±0.00 0.008±0.00 0.195±0.00 0.073±0.06 0.019±0.00 0.022±0.00 0.012±0.00 0.266±0.00 N/A 0.495±0.00 N/A 0.052±0.01 N/A 0.015±0.00
ENSG00000261672 ENST00000561655 N/A N/A N/A N/A 0.078±0.00 0.611±0.00 0.117±0.08 0.346±0.00 0.099±0.00 N/A N/A 0.537±0.15 0.256±0.12 0.162±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031609 ENSMUST00000034022 4.836±3.18 10.519±2.64 11.108±1.70 17.364±11.95 4.625±2.83 8.239±0.96 3.372±1.12 23.790±6.00 6.890±4.90 5.996±1.43 2.602±0.49 9.065±3.47 5.411±1.12 8.958±2.84
ENSMUSG00000031610 ENSMUST00000034023 0.058±0.00 0.177±0.06 0.054±0.00 2.597±1.26 0.117±0.03 0.351±0.12 0.134±0.03 0.498±0.10 0.428±0.56 0.477±0.21 0.068±0.03 0.069±0.00 0.066±0.01 N/A
ENSMUSG00000038193 ENSMUST00000040104 7.246±7.23 22.866±6.77 19.024±0.82 0.086±0.06 0.023±0.01 4.919±1.80 5.864±1.78 0.134±0.06 1.883±0.32 0.124±0.03 0.053±0.02 2.334±0.91 7.949±4.12 0.140±0.20
ENSMUSG00000096917 ENSMUST00000180690 0.556±0.01 0.239±0.10 1.227±0.25 0.784±0.62 0.376±0.20 0.432±0.09 N/A 1.484±0.35 1.115±0.88 0.366±0.03 0.633±0.15 0.489±0.21 0.416±0.20 0.329±0.19
ENSMUSG00000097910 ENSMUST00000181638 N/A 0.121±0.05 0.860±0.00 0.004±0.00 N/A 0.117±0.05 0.232±0.00 0.016±0.00 0.071±0.04 0.019±0.00 0.045±0.00 0.107±0.05 0.108±0.05 0.025±0.01
ENSMUSG00000100348 ENSMUST00000187718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A 6.820±0.48 N/A
ENSMUST00000189098 N/A N/A N/A N/A N/A N/A N/A 0.710±0.13 N/A N/A 0.277±0.00 N/A N/A N/A
ENSMUSG00000100510 ENSMUST00000185635 N/A 0.450±0.00 N/A 0.022±0.00 N/A 0.473±0.14 4.777±0.83 0.140±0.00 0.440±0.00 0.345±0.00 0.097±0.00 0.523±0.30 N/A N/A
ENSMUST00000185793 N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A 0.675±0.13 N/A N/A 0.620±0.00 N/A N/A
ENSMUST00000185946 3.629±0.67 0.780±0.00 N/A N/A N/A 0.613±0.51 8.174±1.62 0.124±0.00 0.918±0.41 0.226±0.07 0.160±0.00 0.906±0.00 1.312±0.00 0.139±0.00
ENSMUST00000186214 N/A N/A N/A 0.040±0.00 N/A N/A N/A 0.104±0.00 0.265±0.00 N/A 0.048±0.00 0.526±0.00 N/A 0.234±0.03
ENSMUST00000186386 N/A 0.739±0.00 N/A N/A N/A 0.517±0.00 3.312±0.37 N/A 0.318±0.09 0.179±0.00 N/A 0.186±0.00 0.712±0.00 N/A
ENSMUST00000187461 4.283±2.96 1.857±0.61 N/A 0.097±0.07 0.366±0.11 1.170±0.28 6.884±1.26 0.173±0.09 0.726±0.32 0.403±0.09 0.106±0.00 0.981±0.64 5.160±0.00 0.151±0.05
ENSMUST00000189143 2.439±2.32 3.654±1.08 N/A N/A N/A 1.571±0.90 10.087±0.63 N/A 0.345±0.00 0.652±0.00 N/A 0.975±0.52 N/A N/A
ENSMUST00000189169 3.947±0.59 0.801±0.06 N/A N/A N/A 0.523±0.28 3.637±0.69 0.120±0.07 0.404±0.17 N/A N/A 0.395±0.22 2.184±1.23 N/A

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