C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho-related BTB domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164292 RHOBTB3 9606 + 5:95713522-95824383 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379982 RHOBTB3-001 95731175-95796367 protein_coding
  ENST00000502541 RHOBTB3-016 95736939-95763542 nonsense_mediated_decay
  ENST00000503737 RHOBTB3-011 95783834-95794332 protein_coding
  ENST00000504179 RHOBTB3-017 95767755-95793246 protein_coding
  ENST00000504949 RHOBTB3-005 95717633-95756093 retained_intron
  ENST00000506817 RHOBTB3-004 95731146-95732751 protein_coding
  ENST00000506959 RHOBTB3-006 95730872-95748441 protein_coding
  ENST00000507186 RHOBTB3-008 95780007-95783869 retained_intron
  ENST00000510226 RHOBTB3-003 95713522-95736922 processed_transcript
  ENST00000510313 RHOBTB3-009 95768140-95789383 protein_coding
  ENST00000510623 RHOBTB3-014 95731956-95752287 nonsense_mediated_decay
  ENST00000511558 RHOBTB3-012 95783582-95788853 retained_intron
  ENST00000512878 RHOBTB3-007 95731725-95737011 retained_intron
  ENST00000513091 RHOBTB3-010 95788815-95824383 protein_coding
  ENST00000514198 RHOBTB3-015 95788821-95793496 protein_coding
  ENST00000515852 RHOBTB3-002 95713522-95732012 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379982ENST00000502541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379982 8.597±0.00 0.349±0.00 N/A 17.170±10.96 10.476±4.55 8.399±0.59 4.560±1.50 4.262±2.69 3.086±0.05 4.409±2.41 4.805±1.74 11.361±2.78 4.460±2.95 2.433±1.09
ENST00000502541 N/A N/A 33.033±0.00 39.727±0.00 16.916±0.00 31.629±0.00 18.970±0.00 11.816±0.00 40.753±0.00 14.872±0.00 17.777±0.00 53.398±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005524 IDA ATP binding
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006200 IDA ATP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016887 IDA ATPase activity
GO:0017137 IPI Rab GTPase binding
GO:0042147 IMP retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090036 RHOBTB3 Rho-related BTB domain containing 3 protein_coding Danio_rerio
ENSMUSG00000021589 Rhobtb3 Rho-related BTB domain containing 3 protein_coding Mus_musculus

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