C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho-related BTB domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379982 RHOBTB3-001 ENSG00000164292 9606 + 5:95731175-95796367 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379982
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379982 8.597±0.00 0.349±0.00 17.170±10.96 10.476±4.55 8.399±0.59 4.560±1.50 4.262±2.69 3.086±0.05 4.409±2.41 4.805±1.74 11.361±2.78 4.460±2.95 2.433±1.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005524 IDA ATP binding
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006200 IDA ATP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016887 IDA ATPase activity
GO:0017137 IPI Rab GTPase binding
GO:0042147 IMP retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022078 Rhobtb3-001 protein_coding Mus_musculus 0 2512
ENSMUST00000109606 Rhobtb3-002 protein_coding Mus_musculus 0 972
ENSMUST00000123353 Rhobtb3-003 processed_transcript Mus_musculus 0 821
ENSMUST00000022734 Dnajc3-201 protein_coding Mus_musculus 0.000008 58
ENSMUST00000115797 Arid1b-201 protein_coding Mus_musculus 0.00003 57
ENSMUST00000092723 Arid1b-002 protein_coding Mus_musculus 0.00003 57

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