C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho-related BTB domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021589 Rhobtb3 10090 - 13:75869537-75943925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022078 Rhobtb3-001 75869537-75943867 protein_coding
  ENSMUST00000109606 Rhobtb3-002 75912747-75943925 protein_coding
  ENSMUST00000123353 Rhobtb3-003 75872013-75885667 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022078ENSMUST00000109606ENSMUST00000123353
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022078 2.518±1.37 0.623±0.08 3.461±0.16 5.588±3.28 1.789±0.26 0.741±0.17 2.302±0.40 0.675±0.17 0.962±0.50 1.380±0.22 2.552±1.08 2.674±0.95 0.700±0.56 1.556±0.90
ENSMUST00000109606 N/A 3.247±1.29 N/A N/A 1.903±0.29 1.719±0.34 N/A 0.532±0.00 0.254±0.05 0.739±0.19 N/A 10.614±2.12 N/A N/A
ENSMUST00000123353 3.189±1.91 4.695±1.46 N/A N/A 4.615±0.62 2.435±0.55 2.134±0.22 1.360±0.46 0.929±0.35 1.881±0.20 N/A 12.207±2.71 N/A 12.556±8.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030F CIL_00030F_0002 CGP 13:75839868-75943925

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 ISS ATP binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006200 IEA ATP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016887 ISS ATPase activity
GO:0017137 IEA Rab GTPase binding
GO:0042147 ISS retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090036 RHOBTB3 Rho-related BTB domain containing 3 protein_coding Danio_rerio
ENSG00000164292 RHOBTB3 Rho-related BTB domain containing 3 protein_coding Homo_sapiens

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