C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PAP associated domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164329 PAPD4 9606 + 5:79612120-79686648 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296783 PAPD4-001 79612573-79686648 protein_coding
  ENST00000423041 PAPD4-007 79612433-79686648 protein_coding
  ENST00000428308 PAPD4-201 79612485-79685580 protein_coding
  ENST00000453514 PAPD4-202 79612420-79686648 protein_coding
  ENST00000502269 PAPD4-010 79612520-79614083 processed_transcript
  ENST00000503620 PAPD4-013 79612618-79623316 processed_transcript
  ENST00000504233 PAPD4-002 79612435-79686266 protein_coding
  ENST00000504982 PAPD4-015 79648705-79669005 processed_transcript
  ENST00000505571 PAPD4-006 79612120-79623648 retained_intron
  ENST00000505770 PAPD4-005 79681652-79685330 retained_intron
  ENST00000508620 PAPD4-014 79612575-79619764 processed_transcript
  ENST00000509227 PAPD4-003 79644646-79648651 retained_intron
  ENST00000510721 PAPD4-004 79668721-79685240 retained_intron
  ENST00000513735 PAPD4-016 79648862-79679668 processed_transcript
  ENST00000514095 PAPD4-011 79612575-79620617 processed_transcript
  ENST00000515298 PAPD4-012 79656881-79685233 retained_intron
  ENST00000515807 PAPD4-009 79612503-79623309 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296783ENST00000423041ENST00000428308ENST00000453514ENST00000502269ENST00000504233ENST00000505770ENST00000515298
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296783 N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423041 1.603±0.00 1.775±0.00 N/A N/A 1.729±0.00 0.702±0.00 N/A 1.304±0.00 N/A N/A N/A 1.568±0.15 1.776±0.77 4.458±0.00
ENST00000428308 N/A N/A N/A 0.836±0.00 2.606±0.00 2.625±0.00 N/A N/A N/A N/A N/A 1.871±0.00 N/A N/A
ENST00000453514 6.054±0.00 5.053±0.00 N/A 3.738±0.00 5.420±0.00 1.249±0.12 1.418±0.00 3.430±0.00 1.699±0.00 5.088±0.00 2.958±0.00 4.386±2.20 2.921±0.99 3.867±1.64
ENST00000502269 N/A N/A 10.363±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504233 N/A N/A 1.049±0.00 1.387±0.00 3.057±0.00 1.730±0.00 1.142±0.17 N/A 2.374±0.00 3.278±0.00 N/A 1.085±0.00 3.205±0.00 3.730±0.00
ENST00000505770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.909±0.00 N/A N/A N/A
ENST00000515298 N/A N/A N/A 6.977±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077D CIL_00077D_0003 CGP 5:79612120-79800240

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0004652 IDA polynucleotide adenylyltransferase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0031380 IC nuclear RNA-directed RNA polymerase complex
GO:0043631 IDA RNA polyadenylation
GO:0046872 IEA metal ion binding
GO:0071044 IMP histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055385 papd4 PAP associated domain containing 4 protein_coding Danio_rerio
ENSDARG00000071511 papd4 PAP associated domain containing 4 protein_coding Danio_rerio
ENSMUSG00000042167 Papd4 PAP associated domain containing 4 protein_coding Mus_musculus

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