C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAP associated domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453514 PAPD4-202 ENSG00000164329 9606 + 5:79612420-79686648 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000453514
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000453514 6.054±0.00 5.053±0.00 3.738±0.00 5.420±0.00 1.249±0.12 1.418±0.00 3.430±0.00 1.699±0.00 5.088±0.00 2.958±0.00 4.386±2.20 2.921±0.99 3.867±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077D CIL_00077D_0003 CGP 5:79612120-79800240

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0004652 IDA polynucleotide adenylyltransferase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0031380 IC nuclear RNA-directed RNA polymerase complex
GO:0043631 IDA RNA polyadenylation
GO:0046872 IEA metal ion binding
GO:0071044 IMP histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048702 Papd4-201 protein_coding Mus_musculus 0 2265
ENSMUST00000122385 Gm15975-001 processed_pseudogene Mus_musculus 0 1513
ENSMUST00000186523 RP23-361M12.1-001 processed_pseudogene Mus_musculus 0 472

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