C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor necrosis factor receptor superfamily, member 11b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164761 TNFRSF11B 9606 - 8:118923557-118952200 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297350 TNFRSF11B-001 118923557-118952200 protein_coding
  ENST00000517352 TNFRSF11B-002 118926510-118951883 nonsense_mediated_decay
  ENST00000521597 TNFRSF11B-003 118924475-118929073 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000297350ENST00000517352ENST00000521597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000297350 0.496±0.00 1.458±0.00 0.914±0.00 0.297±0.20 2.010±0.58 0.227±0.00 0.564±0.32 3.820±2.63 0.458±0.28 1.595±0.00 3.709±2.70 2.321±0.21 0.204±0.12
ENST00000517352 N/A N/A N/A 0.415±0.00 N/A N/A N/A N/A N/A 4.265±0.00 N/A N/A 0.176±0.12
ENST00000521597 1.119±0.00 0.957±0.00 1.520±0.00 0.722±0.00 3.240±1.30 0.275±0.01 1.082±0.00 5.729±0.00 0.682±0.00 N/A 7.534±6.59 3.387±2.15 0.339±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I4 CIL_0005I4_0001 CGP 8:118923557-119106582

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0004872 TAS receptor activity
GO:0005125 TAS cytokine activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006915 IEA apoptotic process
GO:0007165 IEA signal transduction
GO:0007584 IEA response to nutrient
GO:0010035 IEA response to inorganic substance
GO:0030198 IEA extracellular matrix organization
GO:0032026 IEA response to magnesium ion
GO:0042489 IEA negative regulation of odontogenesis of dentin-containing tooth
GO:0042493 IEA response to drug
GO:0043627 IEA response to estrogen
GO:0045779 IEA negative regulation of bone resorption
GO:0046685 IEA response to arsenic-containing substance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034243 tnfrsf11b tumor necrosis factor receptor superfamily, member 11b protein_coding Danio_rerio
ENSMUSG00000063727 Tnfrsf11b tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) protein_coding Mus_musculus

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