C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily V, member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165125 TRPV6 9606 - 7:142871203-142885762 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359396 TRPV6-001 142871203-142885762 protein_coding
  ENST00000431833 TRPV6-007 142877240-142877979 protein_coding
  ENST00000436401 TRPV6-006 142874098-142885745 protein_coding
  ENST00000463646 TRPV6-201 142871214-142878030 protein_coding
  ENST00000474388 TRPV6-009 142876114-142876808 retained_intron
  ENST00000485138 TRPV6-004 142871209-142876540 retained_intron
  ENST00000489123 TRPV6-008 142876824-142877955 retained_intron
  ENST00000615386 TRPV6-005 142871213-142885389 retained_intron
  ENST00000619250 TRPV6-003 142873814-142876444 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359396ENST00000463646ENST00000485138ENST00000615386ENST00000619250
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359396 N/A 0.080±0.00 N/A 0.209±0.00 N/A N/A 2.347±0.00 0.109±0.00 0.099±0.09 N/A 0.059±0.00 11.640±2.47 N/A
ENST00000463646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A
ENST00000485138 N/A N/A 1.564±1.36 N/A 0.062±0.00 0.030±0.00 N/A N/A N/A N/A 0.071±0.02 N/A 0.348±0.10
ENST00000615386 0.008±0.00 N/A 0.397±0.00 0.022±0.02 0.034±0.00 0.005±0.00 N/A N/A 0.007±0.00 0.009±0.00 0.020±0.02 0.756±0.00 0.098±0.00
ENST00000619250 N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039T CIL_00039T_0001 CGP 7:142855061-142885762
CIL_0006VI CIL_0006VI_0001 CGP 7:142871203-142933808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005262 IDA calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005516 IDA calmodulin binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0006816 NAS calcium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017158 NAS regulation of calcium ion-dependent exocytosis
GO:0034220 TAS ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014496 trpv6 transient receptor potential cation channel, subfamily V, member 6 protein_coding Danio_rerio
ENSMUSG00000029868 Trpv6 transient receptor potential cation channel, subfamily V, member 6 protein_coding Mus_musculus

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