C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTPase activating protein and VPS9 domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165219 GAPVD1 9606 + 9:125261794-125367207 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265956 GAPVD1-201 125302109-125342232 protein_coding
  ENST00000297933 GAPVD1-015 125261911-125364119 protein_coding
  ENST00000312123 GAPVD1-003 125298922-125362746 protein_coding
  ENST00000394083 GAPVD1-016 125261843-125363105 protein_coding
  ENST00000394084 GAPVD1-005 125261829-125309300 protein_coding
  ENST00000394104 GAPVD1-202 125298886-125365010 protein_coding
  ENST00000394105 GAPVD1-012 125261832-125363329 protein_coding
  ENST00000431329 GAPVD1-009 125302210-125342255 protein_coding
  ENST00000436712 GAPVD1-011 125302307-125342234 protein_coding
  ENST00000461379 GAPVD1-017 125261810-125302148 protein_coding
  ENST00000467707 GAPVD1-019 125354697-125359847 retained_intron
  ENST00000467750 GAPVD1-001 125261911-125341264 protein_coding
  ENST00000469498 GAPVD1-008 125341235-125342106 processed_transcript
  ENST00000469528 GAPVD1-018 125261831-125295522 processed_transcript
  ENST00000470056 GAPVD1-002 125261832-125367207 protein_coding
  ENST00000474637 GAPVD1-006 125345890-125363025 retained_intron
  ENST00000479511 GAPVD1-010 125336709-125337408 retained_intron
  ENST00000495588 GAPVD1-004 125261955-125269054 processed_transcript
  ENST00000495955 GAPVD1-014 125261868-125363328 protein_coding
  ENST00000497580 GAPVD1-013 125261794-125341864 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265956ENST00000297933ENST00000312123ENST00000394083ENST00000394104ENST00000394105ENST00000431329ENST00000470056ENST00000474637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265956 N/A N/A N/A N/A N/A N/A N/A 1.457±0.00 N/A N/A N/A N/A N/A N/A
ENST00000297933 N/A N/A 1.901±0.00 3.318±0.00 2.884±0.00 2.544±0.00 2.145±0.00 0.975±0.00 3.099±0.00 2.244±0.00 0.810±0.00 4.452±0.00 N/A N/A
ENST00000312123 N/A N/A 1.310±0.00 2.937±0.00 2.564±0.00 1.821±0.54 N/A N/A N/A 3.438±0.00 1.694±0.00 2.542±0.00 N/A 7.080±0.00
ENST00000394083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.783±0.00 3.655±0.00 7.685±4.92
ENST00000394104 N/A 3.833±0.00 0.842±0.00 1.929±0.90 3.472±1.34 2.131±0.00 1.108±0.00 0.922±0.33 1.940±0.33 4.552±1.40 1.796±0.31 3.128±1.01 4.169±0.82 2.834±1.02
ENST00000394105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.621±0.00
ENST00000431329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.453±0.00
ENST00000470056 0.938±0.00 2.288±0.00 N/A 0.762±0.00 1.063±0.00 0.967±0.00 0.496±0.00 0.623±0.19 0.926±0.11 0.982±0.21 N/A 0.894±0.24 0.803±0.18 N/A
ENST00000474637 N/A N/A N/A N/A N/A N/A N/A 1.811±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 IMP guanyl-nucleotide exchange factor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0032318 IEA regulation of Ras GTPase activity
GO:0032794 IMP GTPase activating protein binding
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction
GO:0051223 IMP regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089695 GAPVD1 (1 of 2) GTPase activating protein and VPS9 domains 1 protein_coding Danio_rerio
ENSDARG00000090183 gapvd1 GTPase activating protein and VPS9 domains 1 protein_coding Danio_rerio
ENSMUSG00000026867 Gapvd1 GTPase activating protein and VPS9 domains 1 protein_coding Mus_musculus

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