C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating protein and VPS9 domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470056 GAPVD1-002 ENSG00000165219 9606 + 9:125261832-125367207 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000470056
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000470056 0.938±0.00 2.288±0.00 0.762±0.00 1.063±0.00 0.967±0.00 0.496±0.00 0.623±0.19 0.926±0.11 0.982±0.21 0.894±0.24 0.803±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IMP guanyl-nucleotide exchange factor activity
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0032318 IEA regulation of Ras GTPase activity
GO:0032794 IMP GTPase activating protein binding
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction
GO:0051223 IMP regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113099 Gapvd1-202 protein_coding Mus_musculus 0 3965
ENSMUST00000137528 Gapvd1-005 protein_coding Mus_musculus 0 2708
ENSMUST00000028224 Gapvd1-201 protein_coding Mus_musculus 0 2279
ENSMUST00000102800 Gapvd1-001 protein_coding Mus_musculus 0 2279
ENSMUST00000113101 Gapvd1-004 protein_coding Mus_musculus 0 2272
ENSMUST00000113111 Gapvd1-002 protein_coding Mus_musculus 0 1927
ENSMUST00000113103 Gapvd1-007 protein_coding Mus_musculus 0 1581
ENSMUST00000169207 Gapvd1-013 retained_intron Mus_musculus 0 1531
ENSMUST00000138203 Gapvd1-011 nonsense_mediated_decay Mus_musculus 0 643
ENSMUST00000150859 Gapvd1-010 processed_transcript Mus_musculus 0 625
ENSMUST00000142436 Gapvd1-006 protein_coding Mus_musculus 0 595
ENSMUST00000167251 Gapvd1-012 processed_transcript Mus_musculus 0 468
ENSMUST00000128855 Gapvd1-009 nonsense_mediated_decay Mus_musculus 0 412

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