C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTPase activating protein and VPS9 domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026867 Gapvd1 10090 - 2:34676184-34755232 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028224 Gapvd1-201 34676985-34754561 protein_coding
  ENSMUST00000102800 Gapvd1-001 34676184-34755232 protein_coding
  ENSMUST00000113099 Gapvd1-202 34676985-34754561 protein_coding
  ENSMUST00000113101 Gapvd1-004 34677483-34704386 protein_coding
  ENSMUST00000113103 Gapvd1-007 34699891-34728850 protein_coding
  ENSMUST00000113111 Gapvd1-002 34676184-34717297 protein_coding
  ENSMUST00000128855 Gapvd1-009 34704303-34712218 nonsense_mediated_decay
  ENSMUST00000137528 Gapvd1-005 34699870-34728947 protein_coding
  ENSMUST00000138203 Gapvd1-011 34677894-34684293 nonsense_mediated_decay
  ENSMUST00000142436 Gapvd1-006 34728921-34754411 protein_coding
  ENSMUST00000150859 Gapvd1-010 34704347-34712333 processed_transcript
  ENSMUST00000156098 Gapvd1-008 34709228-34712729 retained_intron
  ENSMUST00000167251 Gapvd1-012 34693451-34704646 processed_transcript
  ENSMUST00000169207 Gapvd1-013 34726318-34754425 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028224ENSMUST00000102800ENSMUST00000113099ENSMUST00000113101ENSMUST00000113103ENSMUST00000113111ENSMUST00000137528ENSMUST00000169207
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028224 1.697±0.00 2.668±0.24 N/A N/A 1.147±0.17 3.015±0.00 N/A N/A N/A 1.314±0.00 N/A 2.485±0.97 3.934±0.17 N/A
ENSMUST00000102800 1.307±0.54 1.282±0.00 1.847±0.14 4.172±1.06 1.128±0.12 2.946±0.82 N/A 1.704±0.36 2.717±1.85 2.194±0.71 N/A 4.225±3.37 4.335±1.64 1.344±0.38
ENSMUST00000113099 N/A 1.086±0.00 N/A 2.602±0.00 1.610±0.21 N/A N/A N/A 2.271±0.00 1.830±0.00 1.318±0.00 N/A N/A 1.322±0.35
ENSMUST00000113101 N/A N/A N/A 8.757±0.00 N/A N/A N/A N/A N/A N/A N/A 12.958±0.00 15.379±1.92 6.669±0.00
ENSMUST00000113103 N/A N/A N/A 5.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113111 6.376±0.77 4.584±1.66 5.317±0.30 11.328±1.62 5.701±1.16 5.217±1.51 3.604±0.33 5.306±0.93 6.681±2.54 8.772±0.64 3.358±0.81 4.897±2.69 6.729±1.28 3.739±0.94
ENSMUST00000137528 N/A N/A N/A 6.576±0.00 N/A N/A N/A N/A N/A N/A N/A 12.702±0.00 8.867±2.06 7.039±0.00
ENSMUST00000169207 N/A 4.802±0.51 N/A N/A N/A N/A N/A N/A N/A 6.770±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 IMP guanyl-nucleotide exchange factor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0032794 IMP GTPase activating protein binding
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction
GO:0051223 IMP regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089695 GAPVD1 (1 of 2) GTPase activating protein and VPS9 domains 1 protein_coding Danio_rerio
ENSDARG00000090183 gapvd1 GTPase activating protein and VPS9 domains 1 protein_coding Danio_rerio
ENSG00000165219 GAPVD1 GTPase activating protein and VPS9 domains 1 protein_coding Homo_sapiens

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