C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 204, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165669 FAM204A 9606 - 10:118297930-118342328 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369170 FAM204A-007 118335114-118342240 protein_coding
  ENST00000369172 FAM204A-006 118310746-118342320 protein_coding
  ENST00000369183 FAM204A-005 118297930-118342320 protein_coding
  ENST00000452252 FAM204A-009 118308606-118309580 processed_transcript
  ENST00000467890 FAM204A-002 118310414-118311486 retained_intron
  ENST00000469758 FAM204A-008 118310720-118342315 processed_transcript
  ENST00000470476 FAM204A-004 118310720-118342315 nonsense_mediated_decay
  ENST00000487269 FAM204A-010 118336025-118342328 retained_intron
  ENST00000490048 FAM204A-011 118335258-118341746 retained_intron
  ENST00000491416 FAM204A-001 118310636-118326349 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369170ENST00000369172ENST00000369183ENST00000467890ENST00000469758ENST00000487269ENST00000490048ENST00000491416
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.456±0.00 3.783±0.00 16.962±0.00
ENST00000369172 19.394±0.00 13.785±0.00 3.219±0.00 13.942±2.31 10.665±1.56 7.315±2.48 6.360±2.40 7.791±0.00 8.041±2.01 6.673±0.45 5.330±3.20 9.915±3.35 4.817±0.35 21.298±3.94
ENST00000369183 1.266±0.00 1.404±0.00 0.455±0.00 1.047±0.44 0.907±0.40 0.522±0.07 0.480±0.18 0.546±0.06 0.644±0.24 0.551±0.04 0.824±0.63 1.005±0.19 0.278±0.06 1.101±0.31
ENST00000467890 9.981±0.00 5.025±0.00 N/A 6.491±0.00 6.230±0.00 3.565±0.00 3.047±0.00 4.387±0.00 N/A 2.672±0.00 5.756±0.00 4.359±0.00 1.718±0.20 9.328±0.00
ENST00000469758 N/A N/A N/A N/A 4.429±0.00 2.847±0.00 3.177±0.00 N/A N/A 3.966±0.00 N/A N/A 0.886±0.00 N/A
ENST00000487269 N/A N/A 7.727±0.00 N/A 9.076±0.00 9.386±0.00 5.467±0.00 7.695±0.00 10.493±0.00 N/A 7.633±0.00 12.758±0.00 N/A N/A
ENST00000490048 N/A N/A 3.436±0.00 N/A N/A N/A N/A N/A N/A 5.983±0.00 N/A N/A N/A N/A
ENST00000491416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.197±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MJ CIL_0008MJ_0001 VISTA 10:117808289-118409839
CIL_0004H4 CIL_0004H4_0002 CGP 10:118004916-118342328
CIL_0008IJ CIL_0008IJ_0001 VISTA 10:118014527-118616184
CIL_0007KI CIL_0007KI_0002 UCNEbase 10:118177484-118467460
CIL_0003M4 CIL_0003M4_0001 CGP 10:118297930-118595699

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039699 fam204a family with sequence similarity 204, member A protein_coding Danio_rerio
ENSMUSG00000057858 Fam204a family with sequence similarity 204, member A protein_coding Mus_musculus

Loading