C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008MJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm449 VISTA 9606 10:117808289-118409839
GeneTranscriptPositionBiotype
ENSG00000107560 (RAB11FIP2)
RAB11 family interacting protein 2 (class I) 		ENST00000355624 (RAB11FIP2-001) 118004916-118046603 protein_coding
ENST00000369199 (RAB11FIP2-201) 118004918-118046603 protein_coding
ENST00000476207 (RAB11FIP2-003) 118005756-118015110 processed_transcript
ENST00000483413 (RAB11FIP2-002) 118038924-118040312 retained_intron
ENSG00000165669 (FAM204A)
family with sequence similarity 204, member A 		ENST00000369170 (FAM204A-007) 118335114-118342240 protein_coding
ENST00000369172 (FAM204A-006) 118310746-118342320 protein_coding
ENST00000369183 (FAM204A-005) 118297930-118342320 protein_coding
ENST00000452252 (FAM204A-009) 118308606-118309580 processed_transcript
ENST00000467890 (FAM204A-002) 118310414-118311486 retained_intron
ENST00000469758 (FAM204A-008) 118310720-118342315 processed_transcript
ENST00000470476 (FAM204A-004) 118310720-118342315 nonsense_mediated_decay
ENST00000487269 (FAM204A-010) 118336025-118342328 retained_intron
ENST00000490048 (FAM204A-011) 118335258-118341746 retained_intron
ENST00000491416 (FAM204A-001) 118310636-118326349 processed_transcript
ENSG00000232139 (LINC00867)
long intergenic non-protein coding RNA 867 		ENST00000411666 (LINC00867-002) 118357545-118359203 lincRNA
ENST00000415417 (LINC00867-004) 118357559-118365103 lincRNA
ENST00000445161 (LINC00867-001) 118357108-118359203 lincRNA
ENST00000453236 (LINC00867-003) 118357755-118365103 lincRNA
ENSG00000238276 (RP11-245J24.1)
 ENST00000413810 (RP11-245J24.1-004) 118241564-118242074 retained_intron
ENST00000431695 (RP11-245J24.1-001) 118241643-118247873 lincRNA
ENST00000436430 (RP11-245J24.1-003) 118241652-118267710 lincRNA
ENST00000436975 (RP11-245J24.1-002) 118241645-118247873 lincRNA
ENSG00000263041 (RP11-355F22.1)
 ENST00000575236 (RP11-355F22.1-001) 117825903-117830518 lincRNA
ENSG00000273672 (AC022395.1)
 ENST00000618953 (AC022395.1-201) 118113310-118113418 miRNA
CIL_0008MJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm449 VISTA 10090 19:59715442-60316837
GeneTranscriptPositionBiotype
ENSMUSG00000040022 (Rab11fip2)
RAB11 family interacting protein 2 (class I) 		ENSMUST00000051996 (Rab11fip2-001) 59903696-59943364 protein_coding
ENSMUST00000170819 (Rab11fip2-002) 59906916-59943000 protein_coding
ENSMUST00000171986 (Rab11fip2-003) 59902884-59943654 protein_coding
ENSMUSG00000043623 (4933412A08Rik)
RIKEN cDNA 4933412A08 gene 		ENSMUST00000061046 (4933412A08Rik-201) 60226334-60227678 pseudogene
ENSMUSG00000053117 (E330013P04Rik)
RIKEN cDNA E330013P04 gene 		ENSMUST00000065383 (E330013P04Rik-001) 60144675-60162591 lincRNA
ENSMUST00000190409 (E330013P04Rik-003) 60144704-60153089 lincRNA
ENSMUST00000190698 (E330013P04Rik-002) 60151294-60157305 lincRNA
ENSMUSG00000057858 (Fam204a)
family with sequence similarity 204, member A 		ENSMUST00000065286 (Fam204a-201) 60198586-60226697 protein_coding
ENSMUSG00000090965 (Gm17203)
predicted gene 17203 		ENSMUST00000164379 (Gm17203-001) 59896241-59901062 lincRNA
ENSMUSG00000091378 (Gm4219)
predicted gene 4219 		ENSMUST00000168140 (Gm4219-001) 59943722-59948398 processed_transcript
ENSMUSG00000099678 (RP23-159D6.1)
predicted gene 28351 		ENSMUST00000186261 (RP23-159D6.1-001) 60241853-60243581 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008MJ_0001ENSG00000107560ENST00000355624ENST00000369199ENST00000476207ENST00000483413ENSG00000165669ENST00000369170ENST00000369172ENST00000369183ENST00000452252ENST00000467890ENST00000469758ENST00000470476ENST00000487269ENST00000490048ENST00000491416ENSG00000232139ENST00000411666ENST00000415417ENST00000445161ENST00000453236ENSG00000238276ENST00000413810ENST00000431695ENST00000436430ENST00000436975ENSG00000263041ENST00000575236ENSG00000273672ENST00000618953CIL_0008MJ_0002ENSMUSG00000040022ENSMUST00000051996ENSMUST00000170819ENSMUST00000171986ENSMUSG00000043623ENSMUST00000061046ENSMUSG00000053117ENSMUST00000065383ENSMUST00000190409ENSMUST00000190698ENSMUSG00000057858ENSMUST00000065286ENSMUSG00000090965ENSMUST00000164379ENSMUSG00000091378ENSMUST00000168140ENSMUSG00000099678ENSMUST00000186261
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008MJ_0001ENSG00000107560ENST00000355624ENST00000369199ENST00000483413ENSG00000165669ENST00000369170ENST00000369172ENST00000369183ENST00000467890ENST00000469758ENST00000487269ENST00000490048ENST00000491416ENSG00000232139ENST00000411666ENST00000415417ENST00000445161ENST00000453236ENSG00000238276ENST00000413810ENST00000431695ENST00000436430ENST00000436975ENSG00000263041ENST00000575236ENSG00000273672ENST00000618953CIL_0008MJ_0002ENSMUSG00000040022ENSMUST00000051996ENSMUST00000170819ENSMUST00000171986ENSMUSG00000043623ENSMUST00000061046ENSMUSG00000053117ENSMUST00000065383ENSMUST00000190409ENSMUST00000190698ENSMUSG00000057858ENSMUST00000065286ENSMUSG00000090965ENSMUST00000164379ENSMUSG00000091378ENSMUST00000168140ENSMUSG00000099678ENSMUST00000186261
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107560 ENST00000355624 3.239±0.00 1.696±0.00 0.738±0.00 4.712±0.21 3.318±1.06 2.244±0.00 1.496±0.58 4.334±0.00 2.211±1.31 3.719±2.05 0.574±0.31 3.296±0.27 0.959±0.15 4.373±0.31
ENST00000369199 0.848±0.00 1.673±0.00 N/A 2.631±0.44 1.020±0.00 1.547±0.00 0.459±0.13 2.044±0.00 0.906±0.00 N/A 0.914±0.00 1.286±0.42 0.806±0.00 1.095±0.00
ENST00000476207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.699±0.00 N/A
ENSG00000165669 ENST00000369170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.456±0.00 3.783±0.00 16.962±0.00
ENST00000369172 19.394±0.00 13.785±0.00 3.219±0.00 13.942±2.31 10.665±1.56 7.315±2.48 6.360±2.40 7.791±0.00 8.041±2.01 6.673±0.45 5.330±3.20 9.915±3.35 4.817±0.35 21.298±3.94
ENST00000369183 1.266±0.00 1.404±0.00 0.455±0.00 1.047±0.44 0.907±0.40 0.522±0.07 0.480±0.18 0.546±0.06 0.644±0.24 0.551±0.04 0.824±0.63 1.005±0.19 0.278±0.06 1.101±0.31
ENST00000452252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467890 9.981±0.00 5.025±0.00 N/A 6.491±0.00 6.230±0.00 3.565±0.00 3.047±0.00 4.387±0.00 N/A 2.672±0.00 5.756±0.00 4.359±0.00 1.718±0.20 9.328±0.00
ENST00000469758 N/A N/A N/A N/A 4.429±0.00 2.847±0.00 3.177±0.00 N/A N/A 3.966±0.00 N/A N/A 0.886±0.00 N/A
ENST00000470476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487269 N/A N/A 7.727±0.00 N/A 9.076±0.00 9.386±0.00 5.467±0.00 7.695±0.00 10.493±0.00 N/A 7.633±0.00 12.758±0.00 N/A N/A
ENST00000490048 N/A N/A 3.436±0.00 N/A N/A N/A N/A N/A N/A 5.983±0.00 N/A N/A N/A N/A
ENST00000491416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.197±0.00 N/A N/A N/A
ENSG00000232139 ENST00000411666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.935±0.00
ENST00000415417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.264±0.00
ENST00000445161 N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A
ENST00000453236 N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238276 ENST00000413810 N/A N/A N/A 0.485±0.18 0.181±0.00 N/A N/A 0.604±0.00 N/A N/A N/A 0.142±0.07 N/A 2.462±0.00
ENST00000431695 N/A N/A N/A 1.674±0.00 N/A N/A N/A 0.218±0.00 N/A N/A N/A N/A N/A N/A
ENST00000436430 N/A N/A N/A N/A N/A N/A N/A N/A 0.386±0.00 N/A N/A N/A N/A N/A
ENST00000436975 N/A N/A N/A 0.293±0.00 N/A N/A N/A 0.301±0.00 N/A N/A N/A 0.608±0.00 N/A 5.172±0.00
ENSG00000263041 ENST00000575236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00
ENSG00000273672 ENST00000618953 2.951±0.00 1.581±0.00 N/A 1.166±0.00 1.400±0.00 1.764±0.00 1.472±0.00 N/A 0.510±0.00 0.834±0.00 N/A N/A N/A 0.597±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040022 ENSMUST00000051996 N/A N/A 0.980±0.00 1.554±0.21 0.491±0.00 N/A N/A N/A N/A N/A 0.299±0.00 N/A 0.189±0.10 N/A
ENSMUST00000170819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.163±0.00 0.337±0.00 14.293±0.00
ENSMUST00000171986 1.830±1.14 N/A 3.059±0.45 6.162±0.02 2.153±0.78 0.449±0.00 1.050±0.00 1.215±0.59 0.580±0.21 2.617±0.28 0.662±0.00 2.258±0.35 0.571±0.41 4.488±1.12
ENSMUSG00000043623 ENSMUST00000061046 1.703±0.70 4.027±1.46 N/A N/A 2.714±1.95 3.439±0.47 0.729±0.13 1.106±0.82 0.485±0.10 3.612±0.94 N/A 4.296±2.17 N/A 1.179±0.44
ENSMUSG00000053117 ENSMUST00000065383 3.585±2.45 N/A 0.163±0.00 0.539±0.37 0.252±0.13 0.065±0.03 0.045±0.00 0.102±0.06 0.024±0.02 0.044±0.03 0.066±0.03 3.062±1.31 0.013±0.00 0.256±0.13
ENSMUST00000190409 N/A N/A N/A 0.262±0.00 N/A 0.191±0.00 0.073±0.00 N/A 0.105±0.00 0.096±0.00 0.110±0.02 N/A 0.080±0.01 0.567±0.00
ENSMUST00000190698 0.011±0.00 N/A N/A 0.040±0.00 0.059±0.02 N/A N/A 0.025±0.00 0.016±0.00 N/A 0.021±0.01 0.518±0.09 0.020±0.01 N/A
ENSMUSG00000057858 ENSMUST00000065286 1.636±0.18 3.105±1.44 4.219±0.37 4.874±1.34 2.032±1.25 1.497±0.85 0.971±0.13 1.080±0.36 1.626±1.19 1.502±0.38 3.902±0.31 4.126±2.75 2.158±0.63 1.959±0.76
ENSMUSG00000090965 ENSMUST00000164379 0.062±0.02 0.061±0.00 0.042±0.00 0.072±0.05 0.049±0.02 0.031±0.00 0.025±0.02 0.043±0.01 0.026±0.01 0.102±0.06 0.015±0.00 0.078±0.07 0.013±0.01 0.075±0.04
ENSMUSG00000091378 ENSMUST00000168140 0.019±0.00 N/A 0.031±0.00 0.030±0.01 N/A N/A 0.051±0.01 0.021±0.00 0.019±0.01 0.036±0.01 0.013±0.00 0.043±0.02 0.007±0.00 0.045±0.00
ENSMUSG00000099678 ENSMUST00000186261 N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.03

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