C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298681 SLC39A2-001 ENSG00000165794 9606 + 14:20999290-21001871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverLungOvaryPlacentaTestisENST00000298681
Transcript ID Breast Colon Liver Lung Ovary Placenta Testis
ENST00000298681 0.105±0.05 0.398±0.07 0.010±0.00 0.064±0.00 0.210±0.14 0.233±0.14 0.111±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F1 CIL_0004F1_0001 CGP 14:20989770-21001871
CIL_0004TH CIL_0004TH_0001 CGP 14:20999255-21070872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IMP zinc ion transmembrane transporter activity
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006829 TAS zinc ion transport
GO:0016020 IEA membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 TAS:IEA transmembrane transport
GO:0071577 TAS zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047726 Slc39a2-001 protein_coding Mus_musculus 0 806
ENSMUST00000160668 Slc39a2-002 retained_intron Mus_musculus 0 520
ENSMUST00000161888 Slc39a2-003 protein_coding Mus_musculus 0 488

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