C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spalt-like transcription factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165821 SALL2 9606 - 14:21521081-21537216 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000450879 SALL2-006 21521651-21526227 protein_coding
  ENST00000537235 SALL2-008 21525149-21526213 protein_coding
  ENST00000541965 SALL2-009 21525245-21537104 protein_coding
  ENST00000546363 SALL2-004 21521622-21536902 protein_coding
  ENST00000611430 SALL2-005 21521537-21526500 protein_coding
  ENST00000613414 SALL2-003 21521083-21536934 protein_coding
  ENST00000614342 SALL2-001 21521081-21537216 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450879ENST00000546363ENST00000611430ENST00000613414ENST00000614342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450879 0.600±0.00 1.116±0.00 N/A 4.086±0.00 N/A 1.533±0.00 N/A N/A N/A N/A 0.068±0.00 N/A N/A 1.120±0.00
ENST00000546363 N/A N/A N/A N/A 0.482±0.00 N/A 0.543±0.09 1.443±0.00 N/A 0.676±0.00 0.054±0.04 0.215±0.00 N/A 0.188±0.00
ENST00000611430 N/A N/A 3.464±0.00 N/A 0.407±0.00 N/A N/A N/A 1.977±0.00 N/A 0.259±0.00 N/A N/A N/A
ENST00000613414 N/A N/A N/A N/A N/A 2.137±0.00 0.426±0.00 1.882±0.00 0.099±0.00 N/A N/A 1.281±1.03 0.387±0.00 0.857±0.33
ENST00000614342 N/A N/A N/A 4.135±0.00 1.220±0.00 N/A N/A N/A N/A N/A N/A 0.034±0.00 0.410±0.00 1.446±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CX CIL_0008CX_0001 VISTA 14:21403052-22005074
CIL_0002HK CIL_0002HK_0001 CGP 14:21498133-21537216
CIL_00001W CIL_00001W_0001 CGP 14:21521081-21570744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016581 IEA NuRD complex
GO:0021915 IEA neural tube development
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075116 SALL2 spalt-like transcription factor 2 protein_coding Danio_rerio
ENSMUSG00000049532 Sall2 sal-like 2 (Drosophila) protein_coding Mus_musculus

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