C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spalt-like transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000614342 SALL2-001 ENSG00000165821 9606 - 14:21521081-21537216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENST00000614342
Transcript ID Brain Breast Ovary Placenta Testis
ENST00000614342 4.135±0.00 1.220±0.00 0.034±0.00 0.410±0.00 1.446±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CX CIL_0008CX_0001 VISTA 14:21403052-22005074
CIL_0002HK CIL_0002HK_0001 CGP 14:21498133-21537216
CIL_00001W CIL_00001W_0001 CGP 14:21521081-21570744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016581 IEA NuRD complex
GO:0021915 IEA neural tube development
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058326 Sall2-001 protein_coding Mus_musculus 0 3592
ENSMUST00000135523 Sall2-002 protein_coding Mus_musculus 0 3387
ENSMUST00000057950 Sall3-201 protein_coding Mus_musculus 5e-17 95

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