C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB8B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166128 RAB8B 9606 + 15:63189469-63267782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321437 RAB8B-001 63189469-63267782 protein_coding
  ENST00000558119 RAB8B-004 63189594-63263679 nonsense_mediated_decay
  ENST00000558990 RAB8B-002 63189560-63256594 nonsense_mediated_decay
  ENST00000559006 RAB8B-005 63189606-63262776 protein_coding
  ENST00000559927 RAB8B-003 63189603-63263596 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321437ENST00000558119ENST00000559006ENST00000559927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321437 10.940±0.00 8.782±0.00 1.289±0.00 5.159±0.75 5.313±0.43 6.482±2.32 2.354±1.04 4.009±1.89 4.017±2.53 12.638±2.31 1.384±1.00 7.267±2.05 6.775±1.84 6.190±2.68
ENST00000558119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.171±0.00 N/A 13.186±0.00
ENST00000559006 N/A N/A 4.824±0.00 N/A 10.036±0.00 N/A 1.182±0.00 N/A 11.066±0.00 11.066±0.00 1.849±0.00 8.235±0.00 N/A 6.166±0.00
ENST00000559927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.701±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005778 IDA peroxisomal membrane
GO:0005886 IEA plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0030911 IEA TPR domain binding
GO:0031346 IEA positive regulation of cell projection organization
GO:0031410 IEA cytoplasmic vesicle
GO:0034332 ISS adherens junction organization
GO:0045046 IDA protein import into peroxisome membrane
GO:0045335 IDA phagocytic vesicle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051286 IEA cell tip
GO:0051461 IEA positive regulation of corticotropin secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068628 rab8b RAB8B, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000036943 Rab8b RAB8B, member RAS oncogene family protein_coding Mus_musculus

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