C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB8B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321437 RAB8B-001 ENSG00000166128 9606 + 15:63189469-63267782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321437
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321437 10.940±0.00 8.782±0.00 1.289±0.00 5.159±0.75 5.313±0.43 6.482±2.32 2.354±1.04 4.009±1.89 4.017±2.53 12.638±2.31 1.384±1.00 7.267±2.05 6.775±1.84 6.190±2.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005778 IDA peroxisomal membrane
GO:0005886 IEA plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0030911 IEA TPR domain binding
GO:0031346 IEA positive regulation of cell projection organization
GO:0031410 IEA cytoplasmic vesicle
GO:0034332 ISS adherens junction organization
GO:0045046 IDA protein import into peroxisome membrane
GO:0045335 IDA phagocytic vesicle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051286 IEA cell tip
GO:0051461 IEA positive regulation of corticotropin secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041139 Rab8b-201 protein_coding Mus_musculus 0 1179
ENSMUST00000176033 Gm20689-001 processed_pseudogene Mus_musculus 0 420

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