C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and transmembrane domains 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166159 LRTM2 9606 + 12:1820267-1836752 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299194 LRTM2-001 1820529-1836752 protein_coding
  ENST00000535041 LRTM2-002 1820631-1836399 protein_coding
  ENST00000539859 LRTM2-006 1820584-1827816 processed_transcript
  ENST00000540378 LRTM2-010 1820574-1831230 processed_transcript
  ENST00000542529 LRTM2-005 1820510-1827797 processed_transcript
  ENST00000543694 LRTM2-004 1823236-1831154 protein_coding
  ENST00000543730 LRTM2-009 1820510-1836748 processed_transcript
  ENST00000543818 LRTM2-201 1820267-1836752 protein_coding
  ENST00000544489 LRTM2-007 1820572-1830968 processed_transcript
  ENST00000545157 LRTM2-011 1820483-1827728 processed_transcript
  ENST00000546157 LRTM2-008 1827563-1831101 processed_transcript
  ENST00000546167 LRTM2-003 1822082-1831146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryPlacentaTestisENST00000299194ENST00000535041ENST00000543730ENST00000543818ENST00000546167
Transcript ID Brain Breast Colon Ovary Placenta Testis
ENST00000299194 0.887±0.20 N/A N/A N/A N/A N/A
ENST00000535041 0.956±0.01 N/A N/A 0.047±0.00 N/A N/A
ENST00000543730 N/A 0.010±0.00 0.018±0.00 0.021±0.00 0.028±0.00 0.082±0.00
ENST00000543818 N/A N/A N/A N/A N/A 0.080±0.05
ENST00000546167 N/A N/A 0.127±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XJ CIL_0003XJ_0002 CGP 12:1791957-1918836
CIL_0003XI CIL_0003XI_0002 CGP 12:1820267-2004535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045483 lrtm2 leucine-rich repeats and transmembrane domains 2 protein_coding Danio_rerio
ENSMUSG00000055003 Lrtm2 leucine-rich repeats and transmembrane domains 2 protein_coding Mus_musculus

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