C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166526 ZNF3 9606 - 7:100064033-100082548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292393 ZNF3-013 100075236-100081705 protein_coding
  ENST00000299667 ZNF3-001 100069988-100081740 protein_coding
  ENST00000303915 ZNF3-201 100069979-100079167 protein_coding
  ENST00000412947 ZNF3-005 100071930-100081730 protein_coding
  ENST00000413658 ZNF3-006 100064033-100081727 protein_coding
  ENST00000415068 ZNF3-015 100072171-100077587 protein_coding
  ENST00000424697 ZNF3-202 100069972-100081764 protein_coding
  ENST00000428683 ZNF3-007 100071930-100082548 protein_coding
  ENST00000441298 ZNF3-009 100072080-100081738 protein_coding
  ENST00000449785 ZNF3-008 100071930-100081739 protein_coding
  ENST00000460331 ZNF3-012 100075312-100081709 retained_intron
  ENST00000466121 ZNF3-011 100075317-100081711 retained_intron
  ENST00000479192 ZNF3-010 100077018-100081737 retained_intron
  ENST00000485892 ZNF3-014 100075230-100081703 retained_intron
  ENST00000487620 ZNF3-002 100070177-100081762 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299667ENST00000303915ENST00000412947ENST00000413658ENST00000424697ENST00000449785ENST00000487620
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299667 N/A N/A N/A N/A N/A N/A 1.688±0.00 N/A 1.055±0.41 1.613±0.45 N/A 5.701±0.00 N/A 2.197±0.00
ENST00000303915 N/A 1.658±0.00 N/A 0.890±0.00 0.535±0.00 N/A N/A N/A N/A N/A N/A 2.592±0.00 N/A 1.741±0.00
ENST00000412947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.087±0.00 N/A N/A
ENST00000413658 3.871±0.00 5.426±0.00 N/A 2.953±1.03 6.387±0.00 3.689±0.13 1.787±1.07 5.172±3.44 2.343±0.00 N/A 4.943±0.00 8.705±0.62 4.399±0.14 9.227±0.00
ENST00000424697 N/A 3.744±0.00 0.579±0.00 3.407±0.00 N/A N/A 1.264±0.03 4.716±2.28 1.545±0.00 1.293±0.00 2.576±0.72 4.011±0.81 2.767±0.00 2.070±0.00
ENST00000449785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.705±0.00 N/A
ENST00000487620 N/A N/A N/A 0.728±0.00 0.953±0.00 1.640±0.00 N/A 0.912±0.00 1.164±0.00 N/A N/A 6.192±2.48 2.966±0.00 2.288±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002F6 CIL_0002F6_0001 CGP 7:100015572-100065038
CIL_0005LO CIL_0005LO_0001 CGP 7:100049774-100082548
CIL_0002GB CIL_0002GB_0001 CGP 7:100064033-100092200

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 NAS DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008270 NAS zinc ion binding
GO:0030154 IEA cell differentiation
GO:0042802 IPI identical protein binding
GO:0045321 NAS leukocyte activation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059109 si:dkeyp-113d7.1 zinc finger protein 391 protein_coding Danio_rerio
ENSMUSG00000037007 Zfp113 zinc finger protein 113 protein_coding Mus_musculus

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