C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal modification protein rimK-like family member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166532 RIMKLB 9606 + 12:8681600-8783095 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299673 RIMKLB-002 8698037-8777632 processed_transcript
  ENST00000357529 RIMKLB-201 8697922-8777191 protein_coding
  ENST00000504495 RIMKLB-005 8779031-8783095 processed_transcript
  ENST00000510357 RIMKLB-006 8779812-8783095 processed_transcript
  ENST00000535829 RIMKLB-001 8697900-8774405 protein_coding
  ENST00000537189 RIMKLB-009 8697682-8750013 protein_coding
  ENST00000538135 RIMKLB-004 8699846-8777190 protein_coding
  ENST00000538758 RIMKLB-011 8681600-8714161 retained_intron
  ENST00000539923 RIMKLB-008 8697681-8749971 protein_coding
  ENST00000541044 RIMKLB-007 8697177-8750029 protein_coding
  ENST00000542232 RIMKLB-010 8777590-8783095 processed_transcript
  ENST00000544257 RIMKLB-003 8681691-8783095 nonsense_mediated_decay
  ENST00000619374 RIMKLB-202 8713743-8783085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357529ENST00000504495ENST00000535829ENST00000538135ENST00000538758ENST00000539923ENST00000542232ENST00000544257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357529 N/A N/A N/A 1.667±0.46 N/A N/A N/A N/A 0.058±0.00 3.134±0.00 0.234±0.00 N/A N/A 4.543±1.28
ENST00000504495 N/A 4.253±0.00 N/A N/A 3.363±1.37 N/A N/A 3.238±0.00 1.987±0.00 N/A N/A 20.193±0.00 4.944±0.00 18.240±0.00
ENST00000535829 14.871±0.00 N/A 2.111±0.00 3.158±0.66 N/A 2.400±0.13 0.829±0.00 1.351±0.00 2.104±0.00 N/A 1.359±0.34 5.009±0.56 3.044±0.14 10.214±0.00
ENST00000538135 N/A N/A 0.861±0.00 N/A N/A 0.535±0.00 N/A N/A N/A N/A N/A 1.295±0.00 N/A N/A
ENST00000538758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.844±0.00 N/A N/A
ENST00000539923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.348±0.00 35.963±0.00
ENST00000542232 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.703±0.00 1.426±0.00 N/A N/A N/A
ENST00000544257 N/A N/A N/A N/A N/A 3.392±0.00 N/A N/A N/A N/A 1.094±0.00 N/A 2.842±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0001 VISTA 12:8543390-9149656

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004363 IEA glutathione synthase activity
GO:0005524 IEA ATP binding
GO:0005737 ISS cytoplasm
GO:0006464 IEA cellular protein modification process
GO:0006750 IEA glutathione biosynthetic process
GO:0046872 IEA metal ion binding
GO:0072590 ISS N-acetyl-L-aspartate-L-glutamate ligase activity
GO:0072591 ISS citrate-L-glutamate ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040649 Rimklb ribosomal modification protein rimK-like family member B protein_coding Mus_musculus

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