C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal modification protein rimK-like family member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544257 RIMKLB-003 ENSG00000166532 9606 + 12:8681691-8783095 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonMusclePlacentaENST00000544257
Transcript ID Colon Muscle Placenta
ENST00000544257 3.392±0.00 1.094±0.00 2.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0001 VISTA 12:8543390-9149656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004363 IEA glutathione synthase activity
GO:0005524 IEA ATP binding
GO:0005737 ISS cytoplasm
GO:0006464 IEA cellular protein modification process
GO:0006750 IEA glutathione biosynthetic process
GO:0046872 IEA metal ion binding
GO:0072590 ISS N-acetyl-L-aspartate-L-glutamate ligase activity
GO:0072591 ISS citrate-L-glutamate ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146274 Rimklb-002 nonsense_mediated_decay Mus_musculus 0 1160
ENSMUST00000068242 Rimklb-001 protein_coding Mus_musculus 0 1096

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