C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal modification protein rimK-like family member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040649 Rimklb 10090 - 6:122447296-122486313 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068242 Rimklb-001 122453101-122486313 protein_coding
  ENSMUST00000135320 Rimklb-004 122447298-122452732 processed_transcript
  ENSMUST00000143701 Rimklb-003 122459226-122472554 nonsense_mediated_decay
  ENSMUST00000146274 Rimklb-002 122447296-122466587 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068242ENSMUST00000135320ENSMUST00000143701ENSMUST00000146274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068242 0.126±0.14 0.080±0.03 0.069±0.00 11.118±10.22 0.165±0.06 0.023±0.00 0.024±0.01 0.067±0.01 0.027±0.01 0.171±0.03 0.032±0.02 3.276±1.71 1.017±0.64 14.117±3.80
ENSMUST00000135320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.09 N/A N/A N/A
ENSMUST00000143701 0.306±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A N/A
ENSMUST00000146274 N/A N/A N/A N/A 0.134±0.01 0.053±0.00 0.020±0.01 0.070±0.00 0.041±0.00 0.055±0.00 0.068±0.02 9.660±0.00 N/A 47.590±2.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006464 IEA cellular protein modification process
GO:0046872 IEA metal ion binding
GO:0072590 IDA N-acetyl-L-aspartate-L-glutamate ligase activity
GO:0072591 IDA citrate-L-glutamate ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000166532 RIMKLB ribosomal modification protein rimK-like family member B protein_coding Homo_sapiens

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