C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167272 POP5 9606 - 12:120578764-120581398 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341039 POP5-002 120578764-120581379 protein_coding
  ENST00000357500 POP5-001 120579045-120581398 protein_coding
  ENST00000511394 POP5-007 120579369-120580139 retained_intron
  ENST00000535245 POP5-004 120579352-120581251 retained_intron
  ENST00000539716 POP5-003 120580596-120581398 retained_intron
  ENST00000541834 POP5-008 120579242-120579995 retained_intron
  ENST00000542568 POP5-009 120579048-120579625 retained_intron
  ENST00000542776 POP5-005 120579048-120581336 processed_transcript
  ENST00000543355 POP5-006 120579154-120581381 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341039ENST00000357500ENST00000511394ENST00000535245ENST00000539716ENST00000541834ENST00000542568ENST00000542776ENST00000543355
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341039 N/A 3.452±0.00 N/A 0.598±0.00 0.282±0.00 N/A N/A N/A N/A N/A 0.984±0.00 3.138±0.00 N/A N/A
ENST00000357500 6.265±0.00 10.477±0.00 N/A 6.488±0.00 22.121±0.00 6.773±0.00 5.898±4.27 5.985±4.07 6.573±5.37 4.553±0.00 1.377±0.48 12.210±2.20 6.658±3.57 9.703±0.00
ENST00000511394 N/A N/A 1.929±0.00 0.955±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.365±0.00
ENST00000535245 N/A N/A N/A 0.681±0.00 N/A N/A N/A N/A N/A N/A N/A 2.907±0.80 N/A N/A
ENST00000539716 N/A N/A 1.530±0.00 N/A 0.591±0.00 0.965±0.00 N/A 2.244±0.00 1.403±0.00 1.302±0.00 N/A 4.300±0.00 N/A 1.731±0.00
ENST00000541834 N/A N/A N/A N/A N/A N/A 0.260±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000542568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.695±0.00 N/A N/A N/A
ENST00000542776 N/A N/A N/A 1.411±0.00 1.085±0.00 N/A N/A N/A N/A N/A N/A 4.912±2.86 5.418±0.00 4.206±0.00
ENST00000543355 N/A N/A N/A 2.522±0.00 0.279±0.00 3.177±0.00 N/A 6.095±0.00 N/A 1.856±0.00 1.383±0.00 N/A N/A 3.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841
CIL_00075W CIL_00075W_0002 CGP 12:120533480-120581398

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004526 IEA ribonuclease P activity
GO:0004540 IEA ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005655 IEA nucleolar ribonuclease P complex
GO:0008033 IEA tRNA processing
GO:0016070 IEA RNA metabolic process
GO:0090501 IEA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053452 pop5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000060152 Pop5 processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae) protein_coding Mus_musculus

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