C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060152 Pop5 10090 + 5:115235836-115245351 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081497 Pop5-001 115235836-115240991 protein_coding
  ENSMUST00000128830 Pop5-004 115238035-115240944 nonsense_mediated_decay
  ENSMUST00000135455 Pop5-002 115238032-115245351 nonsense_mediated_decay
  ENSMUST00000140083 Pop5-006 115240341-115240966 processed_transcript
  ENSMUST00000142233 Pop5-005 115238047-115240667 retained_intron
  ENSMUST00000154800 Pop5-003 115237979-115240242 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081497ENSMUST00000128830ENSMUST00000135455ENSMUST00000140083ENSMUST00000154800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081497 30.113±4.43 73.200±7.02 15.319±2.81 11.413±7.84 28.935±11.30 20.746±5.55 14.481±2.42 60.410±4.96 29.025±6.88 16.886±2.36 5.379±0.95 39.807±3.86 16.521±9.31 5.335±0.33
ENSMUST00000128830 N/A N/A 5.285±1.03 12.951±0.00 37.892±0.00 N/A 3.834±0.00 N/A 14.310±3.60 N/A 18.782±1.51 15.626±6.87 24.575±22.16 2.748±0.00
ENSMUST00000135455 3.400±0.11 N/A 2.414±0.50 2.209±0.81 2.540±0.77 2.373±0.35 0.867±0.00 N/A 3.433±0.62 2.073±0.37 N/A 4.498±2.25 0.820±0.22 1.040±0.13
ENSMUST00000140083 N/A N/A N/A 7.488±0.00 N/A N/A N/A N/A N/A N/A N/A 14.175±3.89 8.168±1.71 N/A
ENSMUST00000154800 N/A 43.516±11.86 N/A N/A 27.835±2.59 15.472±5.04 N/A N/A N/A 10.692±3.15 N/A 28.601±5.42 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000171 ISA ribonuclease MRP activity
GO:0000172 ISA ribonuclease MRP complex
GO:0004526 IDA ribonuclease P activity
GO:0005515 IEA protein binding
GO:0005655 IDA nucleolar ribonuclease P complex
GO:0006364 ISA rRNA processing
GO:0008033 IDA tRNA processing
GO:0090501 IDA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053452 pop5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) protein_coding Danio_rerio
ENSG00000167272 POP5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) protein_coding Homo_sapiens

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