C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GATA zinc finger domain containing 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167491 GATAD2A 9606 + 19:19385826-19508931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358713 GATAD2A-001 19458466-19508927 protein_coding
  ENST00000360315 GATAD2A-201 19385833-19508931 protein_coding
  ENST00000404158 GATAD2A-002 19427527-19508927 protein_coding
  ENST00000417582 GATAD2A-013 19386023-19492711 protein_coding
  ENST00000418032 GATAD2A-003 19465340-19507341 nonsense_mediated_decay
  ENST00000429242 GATAD2A-008 19457112-19492416 protein_coding
  ENST00000432704 GATAD2A-007 19427516-19492596 protein_coding
  ENST00000444839 GATAD2A-009 19464682-19492316 protein_coding
  ENST00000448576 GATAD2A-005 19405838-19436219 processed_transcript
  ENST00000457895 GATAD2A-006 19405794-19492675 protein_coding
  ENST00000473184 GATAD2A-010 19472410-19492429 processed_transcript
  ENST00000494516 GATAD2A-004 19385826-19465577 protein_coding
  ENST00000609040 GATAD2A-011 19385971-19505707 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360315ENST00000404158ENST00000417582ENST00000418032ENST00000457895ENST00000609040
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360315 9.719±0.00 3.727±0.00 N/A N/A 6.212±0.00 4.779±0.00 0.165±0.00 8.871±0.00 2.096±0.00 6.922±0.00 3.267±0.00 8.666±2.75 7.069±4.50 5.191±0.00
ENST00000404158 N/A N/A N/A 1.448±0.00 N/A 0.778±0.00 N/A 0.664±0.00 0.253±0.00 N/A N/A 4.229±0.00 N/A 7.375±0.00
ENST00000417582 N/A N/A N/A N/A 5.679±0.00 N/A 1.039±0.00 N/A N/A 2.716±0.00 N/A N/A N/A N/A
ENST00000418032 14.293±0.00 10.339±0.00 0.539±0.00 2.204±1.50 5.172±3.79 6.544±0.00 1.494±0.89 4.240±0.00 4.918±0.00 19.923±0.00 4.271±3.33 6.127±2.95 9.939±0.88 19.387±5.53
ENST00000457895 N/A N/A N/A N/A N/A N/A N/A N/A 1.800±0.00 N/A N/A 4.607±0.00 N/A 25.057±0.00
ENST00000609040 22.033±0.00 N/A N/A N/A 16.826±0.00 N/A N/A N/A N/A N/A N/A 26.502±0.00 23.861±0.00 35.250±2.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NR CIL_0004NR_0002 CGP 19:19385826-19515685

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001701 IEA in utero embryonic development
GO:0001842 IEA neural fold formation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006306 TAS DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010172 IEA embryonic body morphogenesis
GO:0012501 IEA programmed cell death
GO:0016581 IDA NuRD complex
GO:0021506 IEA anterior neuropore closure
GO:0030674 IDA protein binding, bridging
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006192 gatad2ab GATA zinc finger domain containing 2Ab protein_coding Danio_rerio
ENSDARG00000074422 ndufa13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 protein_coding Danio_rerio
ENSMUSG00000036180 Gatad2a GATA zinc finger domain containing 2A protein_coding Mus_musculus

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