C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATA zinc finger domain containing 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404158 GATAD2A-002 ENSG00000167491 9606 + 19:19427527-19508927 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryTestisENST00000404158
Transcript ID Brain Colon Kidney Liver Ovary Testis
ENST00000404158 1.448±0.00 0.778±0.00 0.664±0.00 0.253±0.00 4.229±0.00 7.375±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NR CIL_0004NR_0002 CGP 19:19385826-19515685

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006306 TAS DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016581 IDA NuRD complex
GO:0030674 IDA protein binding, bridging
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065169 Gatad2a-201 protein_coding Mus_musculus 0 1825
ENSMUST00000116463 Gatad2a-202 protein_coding Mus_musculus 0 1812
ENSMUST00000177851 Gatad2a-203 protein_coding Mus_musculus 0 1812

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