C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167680 SEMA6B 9606 - 19:4542593-4559808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000586582 SEMA6B-001 4542593-4559808 protein_coding
  ENST00000586965 SEMA6B-002 4542914-4558457 protein_coding
  ENST00000589889 SEMA6B-007 4545790-4546469 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000586582ENST00000586965ENST00000589889
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000586582 19.422±0.00 22.170±0.00 14.513±12.35 2.089±2.00 5.652±5.61 6.105±0.00 5.095±0.00 2.930±0.00 4.181±3.92 0.763±0.00 3.690±4.10 7.551±2.68 2.526±2.00
ENST00000586965 8.328±0.00 6.856±0.00 14.129±0.00 0.479±0.00 0.337±0.00 1.346±0.74 0.644±0.00 0.428±0.00 N/A 0.222±0.00 1.556±0.06 3.789±0.95 0.851±0.00
ENST00000589889 N/A N/A N/A N/A 0.260±0.00 N/A N/A N/A N/A N/A 0.736±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W7 CIL_0004W7_0001 CGP 19:4536409-4559808
CIL_0000A4 CIL_0000A4_0001 CGP 19:4542593-4655568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IEA semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036626 sema6ba sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba protein_coding Danio_rerio
ENSDARG00000061976 sema6bb sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb protein_coding Danio_rerio
ENSMUSG00000001227 Sema6b sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B protein_coding Mus_musculus

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