C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004W7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171236-ENSG00000167680 CGP 9606 19:4536409-4559808
GeneTranscriptPositionBiotype
ENSG00000167680 (SEMA6B)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B 		ENST00000586582 (SEMA6B-001) 4542593-4559808 protein_coding
ENST00000586965 (SEMA6B-002) 4542914-4558457 protein_coding
ENST00000589889 (SEMA6B-007) 4545790-4546469 retained_intron
ENSG00000171236 (LRG1)
leucine-rich alpha-2-glycoprotein 1 		ENST00000306390 (LRG1-001) 4536409-4540474 protein_coding
ENST00000586883 (LRG1-002) 4538474-4540036 processed_transcript
ENSG00000267385 (CTB-50L17.14)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000464793} 		ENST00000586020 (CTB-50L17.14-001) 4528427-4540067 nonsense_mediated_decay
CIL_0004W7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037095-ENSMUSG00000001227 CGP 10090 17:56119680-56140343
GeneTranscriptPositionBiotype
ENSMUSG00000001227 (Sema6b)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B 		ENSMUST00000001256 (Sema6b-201) 56123085-56140343 protein_coding
ENSMUST00000167545 (Sema6b-202) 56123085-56133852 protein_coding
ENSMUSG00000037095 (Lrg1)
leucine-rich alpha-2-glycoprotein 1 		ENSMUST00000041357 (Lrg1-201) 56119680-56121946 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W7_0001ENSG00000167680ENST00000586582ENST00000586965ENST00000589889ENSG00000171236ENST00000306390ENST00000586883ENSG00000267385ENST00000586020CIL_0004W7_0002ENSMUSG00000001227ENSMUST00000001256ENSMUST00000167545ENSMUSG00000037095ENSMUST00000041357
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W7_0001ENSG00000167680ENST00000586582ENST00000586965ENST00000589889ENSG00000171236ENST00000306390ENST00000586883ENSG00000267385ENST00000586020CIL_0004W7_0002ENSMUSG00000001227ENSMUST00000001256ENSMUST00000167545ENSMUSG00000037095ENSMUST00000041357
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167680 ENST00000586582 19.422±0.00 22.170±0.00 N/A 14.513±12.35 2.089±2.00 5.652±5.61 6.105±0.00 5.095±0.00 2.930±0.00 4.181±3.92 0.763±0.00 3.690±4.10 7.551±2.68 2.526±2.00
ENST00000586965 8.328±0.00 6.856±0.00 N/A 14.129±0.00 0.479±0.00 0.337±0.00 1.346±0.74 0.644±0.00 0.428±0.00 N/A 0.222±0.00 1.556±0.06 3.789±0.95 0.851±0.00
ENST00000589889 N/A N/A N/A N/A N/A 0.260±0.00 N/A N/A N/A N/A N/A 0.736±0.00 N/A N/A
ENSG00000171236 ENST00000306390 2.876±0.00 12.066±0.00 N/A 0.784±0.00 0.672±0.00 0.684±0.64 N/A 10.496±3.35 399.013±398.87 6.047±5.68 N/A 3.281±2.67 1.592±0.76 N/A
ENST00000586883 N/A N/A N/A N/A N/A 0.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267385 ENST00000586020 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001227 ENSMUST00000001256 3.465±2.10 4.928±2.50 0.812±0.08 21.152±8.85 2.562±1.19 0.520±0.10 1.311±0.00 0.592±0.24 0.507±0.15 1.370±0.48 0.713±0.46 2.955±1.09 0.581±0.16 0.185±0.09
ENSMUST00000167545 3.205±1.10 4.168±1.50 0.883±0.04 N/A 3.386±0.64 1.537±0.66 1.751±0.37 0.940±0.31 0.819±0.66 3.321±0.41 0.708±0.37 1.498±0.61 1.527±0.64 N/A
ENSMUSG00000037095 ENSMUST00000041357 138.900±101.05 51.767±14.37 12.267±1.91 0.372±0.44 115.624±42.88 6.079±1.49 10.041±5.82 5.456±1.38 103.339±95.69 76.139±12.72 3.332±1.56 22.021±10.77 2.749±4.82 2.221±1.04

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