C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C2 calcium-dependent domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168014 C2CD3 9606 - 11:74012714-74171210 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313663 C2CD3-001 74034434-74171019 protein_coding
  ENST00000334126 C2CD3-201 74012714-74171019 protein_coding
  ENST00000366334 C2CD3-019 74107876-74109492 retained_intron
  ENST00000414160 C2CD3-005 74034442-74090877 protein_coding
  ENST00000415191 C2CD3-002 74113201-74170957 retained_intron
  ENST00000436679 C2CD3-011 74129174-74133630 retained_intron
  ENST00000442398 C2CD3-006 74012718-74085795 nonsense_mediated_decay
  ENST00000535645 C2CD3-014 74078185-74085599 processed_transcript
  ENST00000535954 C2CD3-007 74161434-74171210 protein_coding
  ENST00000537285 C2CD3-012 74100609-74110588 processed_transcript
  ENST00000538361 C2CD3-016 74036128-74049397 protein_coding
  ENST00000538625 C2CD3-017 74033830-74042202 processed_transcript
  ENST00000539061 C2CD3-003 74128530-74170984 protein_coding
  ENST00000540057 C2CD3-013 74085522-74091364 retained_intron
  ENST00000540452 C2CD3-020 74034432-74042160 processed_transcript
  ENST00000541922 C2CD3-009 74139818-74170998 processed_transcript
  ENST00000542452 C2CD3-018 74013444-74033909 processed_transcript
  ENST00000542484 C2CD3-015 74049519-74070869 processed_transcript
  ENST00000542930 C2CD3-008 74168233-74171172 retained_intron
  ENST00000544293 C2CD3-010 74168014-74170868 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313663ENST00000334126ENST00000415191ENST00000442398ENST00000539061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313663 N/A N/A N/A N/A N/A N/A N/A N/A 1.183±0.00 N/A N/A 0.783±0.00 N/A N/A
ENST00000334126 1.389±0.00 N/A 0.945±0.00 1.390±0.00 2.047±0.00 1.086±0.21 0.521±0.22 1.505±0.00 0.753±0.00 1.082±0.00 N/A 1.742±1.12 1.024±0.00 3.899±0.00
ENST00000415191 N/A N/A N/A N/A N/A N/A N/A 1.054±0.00 N/A 3.107±0.00 1.119±0.00 N/A N/A N/A
ENST00000442398 N/A 3.375±0.00 N/A N/A N/A 1.522±0.00 N/A 3.216±0.00 0.939±0.00 N/A N/A 2.960±0.00 N/A N/A
ENST00000539061 N/A N/A 1.701±0.00 N/A N/A 1.927±0.00 0.683±0.00 1.186±0.00 2.537±0.00 N/A N/A 2.174±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001947 IEA heart looping
GO:0005515 IPI:IEA protein binding
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0007389 IEA pattern specification process
GO:0007420 IEA brain development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0016485 IEA protein processing
GO:0021915 IEA neural tube development
GO:0021997 IEA neural plate axis specification
GO:0030162 IEA regulation of proteolysis
GO:0030326 IEA embryonic limb morphogenesis
GO:0034451 IDA centriolar satellite
GO:0035058 IMP nonmotile primary cilium assembly
GO:0036064 IEA ciliary basal body
GO:0042384 IEA cilium assembly
GO:0042733 IEA embryonic digit morphogenesis
GO:0061511 IDA centriole elongation
GO:0071539 IDA protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074137 C2CD3 C2 calcium-dependent domain containing 3 protein_coding Danio_rerio
ENSMUSG00000047248 C2cd3 C2 calcium-dependent domain containing 3 protein_coding Mus_musculus

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