C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C2 calcium-dependent domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047248 C2cd3 10090 + 7:100372233-100470152 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051777 C2cd3-001 100372233-100470150 protein_coding
  ENSMUST00000098259 C2cd3-201 100372233-100469461 protein_coding
  ENSMUST00000119647 C2cd3-006 100395799-100454441 protein_coding
  ENSMUST00000120196 C2cd3-007 100430150-100470152 protein_coding
  ENSMUST00000133464 C2cd3-003 100372246-100423354 nonsense_mediated_decay
  ENSMUST00000151573 C2cd3-008 100464211-100470152 protein_coding
  ENSMUST00000156559 C2cd3-004 100372281-100407192 retained_intron
  ENSMUST00000184657 C2cd3-012 100451338-100454789 retained_intron
  ENSMUST00000184753 C2cd3-013 100420505-100423080 retained_intron
  ENSMUST00000184779 C2cd3-010 100443353-100444756 retained_intron
  ENSMUST00000185051 C2cd3-009 100429122-100432295 nonsense_mediated_decay
  ENSMUST00000185084 C2cd3-011 100448805-100454830 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051777ENSMUST00000098259ENSMUST00000119647ENSMUST00000120196ENSMUST00000156559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051777 3.899±1.08 2.249±0.74 2.190±0.11 5.174±2.44 3.798±0.63 2.639±0.23 1.113±0.07 2.942±0.79 1.928±1.40 2.943±0.46 1.052±0.14 4.948±1.79 2.216±1.14 7.484±3.29
ENSMUST00000098259 N/A N/A N/A N/A N/A N/A N/A N/A 0.432±0.02 N/A N/A 1.594±0.07 N/A N/A
ENSMUST00000119647 N/A 1.259±0.08 N/A N/A N/A N/A N/A N/A 0.264±0.00 N/A N/A 3.963±0.00 0.734±0.08 1.833±0.00
ENSMUST00000120196 N/A 1.210±0.25 1.278±0.00 3.533±0.00 1.574±0.00 1.386±0.31 N/A N/A N/A 1.624±0.12 0.649±0.00 2.194±0.63 0.758±0.03 N/A
ENSMUST00000156559 N/A N/A N/A 5.575±0.00 N/A N/A N/A N/A N/A N/A N/A 10.502±0.00 4.230±1.06 19.506±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001947 IMP heart looping
GO:0005515 IPI protein binding
GO:0005813 IEA centrosome
GO:0005814 ISS centriole
GO:0007389 IMP pattern specification process
GO:0007420 IMP brain development
GO:0008589 IGI regulation of smoothened signaling pathway
GO:0016485 IMP protein processing
GO:0021915 IMP neural tube development
GO:0021997 IMP neural plate axis specification
GO:0030162 IDA regulation of proteolysis
GO:0030326 IMP embryonic limb morphogenesis
GO:0034451 IDA centriolar satellite
GO:0035058 ISS nonmotile primary cilium assembly
GO:0036064 IDA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0042733 IMP embryonic digit morphogenesis
GO:0061511 IDA centriole elongation
GO:0071539 ISS protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074137 C2CD3 C2 calcium-dependent domain containing 3 protein_coding Danio_rerio
ENSG00000168014 C2CD3 C2 calcium-dependent domain containing 3 protein_coding Homo_sapiens

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