C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LMBR1 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168216 LMBRD1 9606 - 6:69675802-69797111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370570 LMBRD1-001 69675806-69790665 protein_coding
  ENST00000370577 LMBRD1-002 69675802-69797111 protein_coding
  ENST00000472827 LMBRD1-003 69675857-69796885 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370570ENST00000370577ENST00000472827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370570 N/A N/A N/A N/A 4.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370577 14.552±0.00 13.384±0.00 10.816±0.00 18.999±6.60 10.935±4.20 13.793±4.89 7.090±2.56 18.980±5.88 12.918±0.75 12.912±0.64 9.562±0.00 14.360±5.03 17.105±1.56 15.679±0.00
ENST00000472827 N/A 5.747±0.00 N/A 6.924±0.00 6.273±0.00 6.976±0.00 5.243±0.00 16.203±0.00 6.327±0.00 11.484±0.00 3.344±0.59 3.833±0.00 16.589±13.48 3.664±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061Z CIL_00061Z_0002 CGP 6:68635367-69797111

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005158 IEA insulin receptor binding
GO:0005764 IEA lysosome
GO:0005765 TAS lysosomal membrane
GO:0005886 IEA plasma membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0009235 TAS cobalamin metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0031419 IEA cobalamin binding
GO:0038016 IEA insulin receptor internalization
GO:0044281 TAS small molecule metabolic process
GO:0045334 IEA clathrin-coated endocytic vesicle
GO:0046325 IEA negative regulation of glucose import
GO:0046627 IEA negative regulation of insulin receptor signaling pathway
GO:0051898 IEA negative regulation of protein kinase B signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052307 lmbrd1 LMBR1 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000073725 Lmbrd1 LMBR1 domain containing 1 protein_coding Mus_musculus

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