C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LMBR1 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472827 LMBRD1-003 ENSG00000168216 9606 - 6:69675857-69796885 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472827
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472827 5.747±0.00 6.924±0.00 6.273±0.00 6.976±0.00 5.243±0.00 16.203±0.00 6.327±0.00 11.484±0.00 3.344±0.59 3.833±0.00 16.589±13.48 3.664±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061Z CIL_00061Z_0002 CGP 6:68635367-69797111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005765 TAS lysosomal membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0009235 TAS cobalamin metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0031419 IEA cobalamin binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191471 Lmbrd1-001 protein_coding Mus_musculus 0 1051
ENSMUST00000095062 Lmbrd1-002 protein_coding Mus_musculus 0 985
ENSMUST00000186096 Lmbrd1-004 protein_coding Mus_musculus 0 444
ENSMUST00000186190 Lmbrd1-003 protein_coding Mus_musculus 0 257

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