C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059832-ENSDARG00000052307 CGP 7955 13:38699963-39348514
GeneTranscriptPositionBiotype
ENSDARG00000052307 (lmbrd1)
LMBR1 domain containing 1 		ENSDART00000074131 (lmbrd1-001) 39018815-39189359 protein_coding
ENSDART00000100361 (lmbrd1-201) 39018815-39348514 protein_coding
ENSDART00000146031 (lmbrd1-004) 39114473-39189299 retained_intron
ENSDART00000150290 (lmbrd1-002) 39061128-39063591 retained_intron
ENSDART00000150756 (lmbrd1-003) 39063351-39127565 protein_coding
ENSDARG00000059832 (bai3)
brain-specific angiogenesis inhibitor 3 		ENSDART00000111080 (bai3-201) 38918225-38991012 protein_coding
ENSDART00000126945 (bai3-202) 38699963-38863645 protein_coding
ENSDART00000132691 (bai3-001) 38827764-38983882 protein_coding
ENSDART00000137299 (bai3-002) 38918225-38983191 protein_coding
ENSDART00000145292 (bai3-004) 38918450-38963086 protein_coding
ENSDART00000145777 (bai3-003) 38699963-38702446 protein_coding
ENSDARG00000086163 (CR931792.1)
 ENSDART00000127196 (CR931792.1-201) 38882675-38882759 miRNA
ENSDARG00000096073 (COL9A3 (2 of 2))
 ENSDART00000110976 (COL9A3 (2 of 2)-201) 39211941-39482740 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00061Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135298-ENSG00000168216 CGP 9606 6:68635367-69797111
GeneTranscriptPositionBiotype
ENSG00000135298 (BAI3)
brain-specific angiogenesis inhibitor 3 		ENST00000238918 (BAI3-002) 69232406-69389505 protein_coding
ENST00000370598 (BAI3-001) 68635367-69389511 protein_coding
ENST00000546190 (BAI3-201) 68638676-69388891 protein_coding
ENST00000603207 (BAI3-004) 69233034-69324942 protein_coding
ENST00000604969 (BAI3-003) 69233034-69239226 protein_coding
ENSG00000168216 (LMBRD1)
LMBR1 domain containing 1 		ENST00000370570 (LMBRD1-001) 69675806-69790665 protein_coding
ENST00000370577 (LMBRD1-002) 69675802-69797111 protein_coding
ENST00000472827 (LMBRD1-003) 69675857-69796885 nonsense_mediated_decay
ENSG00000219085 (NPM1P37)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 37 		ENST00000403105 (NPM1P37-001) 69705287-69706160 processed_pseudogene
ENSG00000219881 (GAPDHP42)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 		ENST00000406848 (GAPDHP42-001) 69745871-69746851 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061Z_0001ENSDARG00000052307ENSDART00000074131ENSDART00000100361ENSDART00000146031ENSDART00000150290ENSDART00000150756ENSDARG00000059832ENSDART00000111080ENSDART00000126945ENSDART00000132691ENSDART00000137299ENSDART00000145292ENSDART00000145777ENSDARG00000086163ENSDART00000127196ENSDARG00000096073ENSDART00000110976CIL_00061Z_0002ENSG00000135298ENST00000238918ENST00000370598ENST00000546190ENST00000603207ENST00000604969ENSG00000168216ENST00000370570ENST00000370577ENST00000472827ENSG00000219085ENST00000403105ENSG00000219881ENST00000406848
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061Z_0001ENSDARG00000052307ENSDART00000074131ENSDART00000100361ENSDARG00000059832ENSDART00000111080ENSDART00000126945ENSDART00000132691ENSDART00000137299ENSDART00000145777ENSDARG00000086163ENSDART00000127196ENSDARG00000096073ENSDART00000110976CIL_00061Z_0002ENSG00000135298ENST00000238918ENST00000370598ENST00000546190ENST00000603207ENSG00000168216ENST00000370570ENST00000370577ENST00000472827ENSG00000219085ENST00000403105ENSG00000219881ENST00000406848
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000052307 ENSDART00000074131 N/A N/A N/A 6.528±3.89 N/A N/A 4.843±0.44 1.528±0.00 0.745±0.00 N/A 2.361±0.00 N/A N/A N/A
ENSDART00000100361 N/A N/A N/A 8.357±2.63 N/A N/A 4.358±0.36 1.528±0.00 0.745±0.00 N/A 2.361±0.00 N/A N/A N/A
ENSDART00000146031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000059832 ENSDART00000111080 N/A N/A N/A 24.966±10.40 N/A N/A 0.041±0.00 0.136±0.00 N/A N/A 1.739±0.00 N/A N/A N/A
ENSDART00000126945 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.017±0.00 N/A N/A N/A N/A N/A
ENSDART00000132691 N/A N/A N/A 10.531±0.00 N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000137299 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.044±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000145292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145777 N/A N/A N/A 11.116±0.00 N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000086163 ENSDART00000127196 N/A N/A N/A 465.825±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096073 ENSDART00000110976 N/A N/A N/A 0.298±0.00 N/A N/A N/A 0.359±0.00 N/A N/A 1.663±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135298 ENST00000238918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A
ENST00000370598 0.229±0.00 0.141±0.00 N/A 4.152±1.59 0.202±0.17 0.863±0.00 0.291±0.00 0.076±0.00 0.147±0.12 0.249±0.00 N/A 0.060±0.03 0.072±0.01 1.039±0.10
ENST00000546190 0.088±0.00 N/A N/A 6.450±2.98 0.152±0.11 0.762±0.00 0.593±0.00 0.264±0.15 1.401±0.00 0.685±0.43 0.098±0.00 0.168±0.05 0.068±0.04 N/A
ENST00000603207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A N/A N/A
ENST00000604969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168216 ENST00000370570 N/A N/A N/A N/A 4.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370577 14.552±0.00 13.384±0.00 10.816±0.00 18.999±6.60 10.935±4.20 13.793±4.89 7.090±2.56 18.980±5.88 12.918±0.75 12.912±0.64 9.562±0.00 14.360±5.03 17.105±1.56 15.679±0.00
ENST00000472827 N/A 5.747±0.00 N/A 6.924±0.00 6.273±0.00 6.976±0.00 5.243±0.00 16.203±0.00 6.327±0.00 11.484±0.00 3.344±0.59 3.833±0.00 16.589±13.48 3.664±0.03
ENSG00000219085 ENST00000403105 0.058±0.00 0.228±0.00 0.553±0.00 0.335±0.06 0.462±0.00 0.421±0.31 0.240±0.21 0.130±0.06 0.702±0.69 0.820±0.81 0.064±0.00 0.331±0.36 0.124±0.00 0.136±0.05
ENSG00000219881 ENST00000406848 N/A N/A 0.060±0.00 N/A N/A 0.109±0.03 0.026±0.00 N/A N/A N/A N/A 0.466±0.43 N/A N/A

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