C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeat LGI family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168481 LGI3 9606 - 8:22146825-22157084 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306317 LGI3-001 22146825-22156832 protein_coding
  ENST00000424267 LGI3-002 22146830-22156751 protein_coding
  ENST00000517694 LGI3-004 22151538-22157084 protein_coding
  ENST00000518365 LGI3-005 22151892-22156677 nonsense_mediated_decay
  ENST00000520124 LGI3-003 22146830-22156833 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000306317ENST00000424267ENST00000517694ENST00000518365ENST00000520124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000306317 N/A N/A N/A 30.078±27.63 0.013±0.00 N/A 0.321±0.00 N/A N/A 0.223±0.00 N/A 1.142±0.00
ENST00000424267 0.042±0.00 N/A 0.025±0.00 15.777±0.00 N/A 0.355±0.00 0.095±0.00 0.412±0.00 N/A 0.314±0.09 0.048±0.00 0.796±0.45
ENST00000517694 N/A 0.133±0.00 N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000518365 N/A N/A N/A N/A N/A N/A N/A 0.273±0.00 0.064±0.00 N/A N/A N/A
ENST00000520124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0008ZI CIL_0008ZI_0001 VISTA 8:21743578-22344815
CIL_000812 CIL_000812_0001 VISTA 8:21749915-22350771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0006887 IEA exocytosis
GO:0008021 IEA synaptic vesicle
GO:0008152 IEA metabolic process
GO:0017157 IEA regulation of exocytosis
GO:0030054 IEA cell junction
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041358 lgi3 leucine-rich repeat LGI family, member 3 protein_coding Danio_rerio
ENSMUSG00000033595 Lgi3 leucine-rich repeat LGI family, member 3 protein_coding Mus_musculus

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