C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC element 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169189 NSMCE1 9606 - 16:27224991-27268794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361439 NSMCE1-001 27224991-27268794 protein_coding
  ENST00000561960 NSMCE1-006 27233983-27268762 retained_intron
  ENST00000562039 NSMCE1-005 27225172-27233078 protein_coding
  ENST00000563273 NSMCE1-014 27226737-27268740 protein_coding
  ENST00000563512 NSMCE1-010 27235216-27268723 processed_transcript
  ENST00000563900 NSMCE1-007 27233070-27258151 protein_coding
  ENST00000564342 NSMCE1-012 27233050-27268579 protein_coding
  ENST00000565070 NSMCE1-003 27225025-27268741 retained_intron
  ENST00000565384 NSMCE1-004 27225144-27230839 processed_transcript
  ENST00000565626 NSMCE1-008 27257342-27268724 retained_intron
  ENST00000566087 NSMCE1-009 27226731-27268760 nonsense_mediated_decay
  ENST00000567375 NSMCE1-011 27266324-27268728 processed_transcript
  ENST00000567710 NSMCE1-013 27235215-27268733 protein_coding
  ENST00000569236 NSMCE1-002 27224995-27268764 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361439ENST00000561960ENST00000562039ENST00000563273ENST00000563900ENST00000565070ENST00000566087
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361439 17.762±0.00 25.044±0.00 1.073±0.00 11.608±5.66 14.236±11.94 14.983±12.62 7.305±5.44 23.611±15.89 11.142±8.83 18.295±16.93 8.505±8.09 22.286±18.91 32.504±15.09 40.106±12.20
ENST00000561960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.670±0.00 1.634±0.00 N/A N/A
ENST00000562039 14.868±0.00 32.566±0.00 N/A 21.487±0.00 26.052±0.00 26.309±0.00 N/A N/A N/A N/A 8.584±0.00 N/A N/A 47.745±0.00
ENST00000563273 N/A N/A 1.269±0.00 6.129±0.00 N/A 5.042±0.00 N/A N/A N/A N/A N/A 3.883±0.00 N/A N/A
ENST00000563900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.939±0.00 30.590±0.00 72.547±0.00
ENST00000565070 N/A N/A N/A N/A N/A 0.816±0.00 N/A N/A N/A N/A 0.641±0.00 N/A N/A N/A
ENST00000566087 N/A N/A N/A N/A 2.310±0.00 N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V9 CIL_0003V9_0002 CGP 16:27203495-27268794
CIL_0005KN CIL_0005KN_0001 CGP 16:27224991-27364778

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030915 IEA:IDA Smc5-Smc6 complex
GO:0035556 IEA intracellular signal transduction
GO:0043231 IDA intracellular membrane-bounded organelle
GO:2001022 IMP positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034662 nsmce1 non-SMC element 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000030750 Nsmce1 non-SMC element 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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