C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003V9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037844-ENSDARG00000034662 CGP 7955 3:42515674-42547346
GeneTranscriptPositionBiotype
ENSDARG00000034662 (nsmce1)
non-SMC element 1 homolog (S. cerevisiae) 		ENSDART00000049868 (nsmce1-001) 42532232-42547330 protein_coding
ENSDART00000124309 (nsmce1-201) 42532226-42545122 protein_coding
ENSDART00000135819 (nsmce1-002) 42532975-42547346 protein_coding
ENSDARG00000037844 (kdm8)
lysine (K)-specific demethylase 8 		ENSDART00000055141 (kdm8-001) 42515696-42528299 nonsense_mediated_decay
ENSDART00000102267 (kdm8-002) 42515674-42528302 protein_coding
CIL_0003V9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155666-ENSG00000169189 CGP 9606 16:27203495-27268794
GeneTranscriptPositionBiotype
ENSG00000155666 (KDM8)
lysine (K)-specific demethylase 8 		ENST00000286096 (KDM8-001) 27203495-27221768 protein_coding
ENST00000441782 (KDM8-002) 27203975-27220859 protein_coding
ENST00000562269 (KDM8-012) 27203517-27213642 processed_transcript
ENST00000562733 (KDM8-014) 27203996-27210483 protein_coding
ENST00000563571 (KDM8-009) 27214576-27219063 retained_intron
ENST00000563881 (KDM8-015) 27204078-27204444 processed_transcript
ENST00000564961 (KDM8-004) 27203508-27211715 retained_intron
ENST00000567366 (KDM8-008) 27214620-27220667 processed_transcript
ENST00000567735 (KDM8-011) 27214971-27221194 protein_coding
ENST00000567785 (KDM8-005) 27214612-27221084 processed_transcript
ENST00000568792 (KDM8-007) 27214638-27216134 retained_intron
ENST00000568965 (KDM8-003) 27210124-27221722 protein_coding
ENST00000569329 (KDM8-013) 27203803-27210612 protein_coding
ENST00000569592 (KDM8-010) 27220318-27220902 retained_intron
ENSG00000169189 (NSMCE1)
non-SMC element 1 homolog (S. cerevisiae) 		ENST00000361439 (NSMCE1-001) 27224991-27268794 protein_coding
ENST00000561960 (NSMCE1-006) 27233983-27268762 retained_intron
ENST00000562039 (NSMCE1-005) 27225172-27233078 protein_coding
ENST00000563273 (NSMCE1-014) 27226737-27268740 protein_coding
ENST00000563512 (NSMCE1-010) 27235216-27268723 processed_transcript
ENST00000563900 (NSMCE1-007) 27233070-27258151 protein_coding
ENST00000564342 (NSMCE1-012) 27233050-27268579 protein_coding
ENST00000565070 (NSMCE1-003) 27225025-27268741 retained_intron
ENST00000565384 (NSMCE1-004) 27225144-27230839 processed_transcript
ENST00000565626 (NSMCE1-008) 27257342-27268724 retained_intron
ENST00000566087 (NSMCE1-009) 27226731-27268760 nonsense_mediated_decay
ENST00000567375 (NSMCE1-011) 27266324-27268728 processed_transcript
ENST00000567710 (NSMCE1-013) 27235215-27268733 protein_coding
ENST00000569236 (NSMCE1-002) 27224995-27268764 nonsense_mediated_decay
ENSG00000245888 (FLJ21408)
uncharacterized LOC400512 		ENST00000499939 (FLJ21408-005) 27268869-27271976 antisense
ENST00000565060 (FLJ21408-004) 27268846-27284654 antisense
ENST00000566535 (FLJ21408-002) 27286657-27290492 antisense
ENST00000566854 (FLJ21408-001) 27268205-27290468 antisense
ENSG00000259940 (CTD-3203P2.1)
 ENST00000567108 (CTD-3203P2.1-001) 27213308-27214993 antisense
CIL_0003V9_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030752-ENSMUSG00000030750 CGP 10090 7:125444676-125491596
GeneTranscriptPositionBiotype
ENSMUSG00000030750 (Nsmce1)
non-SMC element 1 homolog (S. cerevisiae) 		ENSMUST00000033006 (Nsmce1-001) 125467640-125491596 protein_coding
ENSMUST00000138616 (Nsmce1-002) 125471113-125491399 protein_coding
ENSMUST00000149289 (Nsmce1-003) 125471167-125478559 processed_transcript
ENSMUSG00000030752 (Kdm8)
lysine (K)-specific demethylase 8 		ENSMUST00000033010 (Kdm8-001) 125444676-125462265 protein_coding
ENSMUST00000135129 (Kdm8-002) 125444684-125460021 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003V9_0001ENSDARG00000034662ENSDART00000049868ENSDART00000124309ENSDART00000135819ENSDARG00000037844ENSDART00000055141ENSDART00000102267CIL_0003V9_0002ENSG00000155666ENST00000286096ENST00000441782ENST00000562269ENST00000562733ENST00000563571ENST00000563881ENST00000564961ENST00000567366ENST00000567735ENST00000567785ENST00000568792ENST00000568965ENST00000569329ENST00000569592ENSG00000169189ENST00000361439ENST00000561960ENST00000562039ENST00000563273ENST00000563512ENST00000563900ENST00000564342ENST00000565070ENST00000565384ENST00000565626ENST00000566087ENST00000567375ENST00000567710ENST00000569236ENSG00000245888ENST00000499939ENST00000565060ENST00000566535ENST00000566854ENSG00000259940ENST00000567108CIL_0003V9_0003ENSMUSG00000030750ENSMUST00000033006ENSMUST00000138616ENSMUST00000149289ENSMUSG00000030752ENSMUST00000033010ENSMUST00000135129
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003V9_0001ENSDARG00000034662ENSDART00000049868ENSDART00000124309ENSDART00000135819ENSDARG00000037844ENSDART00000055141ENSDART00000102267CIL_0003V9_0002ENSG00000155666ENST00000286096ENST00000441782ENST00000562269ENST00000562733ENST00000564961ENST00000567366ENST00000567735ENST00000568965ENST00000569329ENST00000569592ENSG00000169189ENST00000361439ENST00000561960ENST00000562039ENST00000563273ENST00000563900ENST00000565070ENST00000566087ENSG00000245888ENST00000499939ENSG00000259940ENST00000567108CIL_0003V9_0003ENSMUSG00000030750ENSMUST00000033006ENSMUST00000138616ENSMUSG00000030752ENSMUST00000033010
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034662 ENSDART00000049868 N/A N/A N/A 0.591±0.27 N/A N/A 1.463±1.39 1.540±0.47 N/A N/A 0.161±0.00 N/A N/A N/A
ENSDART00000124309 N/A N/A N/A 2.307±0.42 N/A N/A 0.970±0.38 1.875±0.85 0.132±0.00 N/A 0.286±0.00 N/A N/A N/A
ENSDART00000135819 N/A N/A N/A N/A N/A N/A 1.021±0.00 1.732±0.00 N/A N/A 0.164±0.00 N/A N/A N/A
ENSDARG00000037844 ENSDART00000055141 N/A N/A N/A 0.451±0.30 N/A N/A 0.217±0.10 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000102267 N/A N/A N/A 0.953±0.66 N/A N/A 0.578±0.00 N/A 0.069±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155666 ENST00000286096 0.275±0.00 1.410±0.00 N/A N/A 0.202±0.00 N/A 0.258±0.15 N/A 4.529±0.00 0.222±0.10 N/A 1.447±0.50 0.892±0.39 0.515±0.17
ENST00000441782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A
ENST00000562269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.114±0.00 N/A N/A N/A
ENST00000562733 N/A N/A 0.639±0.00 N/A N/A N/A 0.288±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564961 N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567366 0.361±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567735 N/A N/A N/A N/A 0.405±0.00 0.550±0.00 N/A N/A N/A N/A 0.469±0.00 N/A N/A N/A
ENST00000567785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568965 0.345±0.00 N/A N/A 0.419±0.08 0.453±0.00 0.106±0.00 0.253±0.00 1.274±0.00 N/A N/A 0.243±0.05 1.152±0.36 1.115±0.00 1.752±0.99
ENST00000569329 N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A 1.147±0.00 N/A N/A N/A N/A
ENST00000569592 N/A N/A N/A N/A N/A 0.386±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169189 ENST00000361439 17.762±0.00 25.044±0.00 1.073±0.00 11.608±5.66 14.236±11.94 14.983±12.62 7.305±5.44 23.611±15.89 11.142±8.83 18.295±16.93 8.505±8.09 22.286±18.91 32.504±15.09 40.106±12.20
ENST00000561960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.670±0.00 1.634±0.00 N/A N/A
ENST00000562039 14.868±0.00 32.566±0.00 N/A 21.487±0.00 26.052±0.00 26.309±0.00 N/A N/A N/A N/A 8.584±0.00 N/A N/A 47.745±0.00
ENST00000563273 N/A N/A 1.269±0.00 6.129±0.00 N/A 5.042±0.00 N/A N/A N/A N/A N/A 3.883±0.00 N/A N/A
ENST00000563512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.939±0.00 30.590±0.00 72.547±0.00
ENST00000564342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565070 N/A N/A N/A N/A N/A 0.816±0.00 N/A N/A N/A N/A 0.641±0.00 N/A N/A N/A
ENST00000565384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566087 N/A N/A N/A N/A 2.310±0.00 N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A N/A
ENST00000567375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000245888 ENST00000499939 N/A N/A 0.214±0.00 N/A N/A N/A 0.210±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000565060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259940 ENST00000567108 N/A 0.806±0.00 N/A 0.187±0.00 0.027±0.00 0.217±0.03 0.135±0.07 N/A 0.097±0.00 0.111±0.00 N/A 0.294±0.27 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030750 ENSMUST00000033006 23.432±3.52 38.857±3.83 23.176±3.77 18.126±12.18 25.626±3.14 18.238±1.33 20.332±1.03 21.457±1.63 21.957±12.62 22.998±2.15 4.955±1.50 37.064±13.23 18.768±17.16 83.756±31.97
ENSMUST00000138616 N/A N/A N/A 16.917±0.00 N/A N/A N/A N/A N/A N/A N/A 52.124±0.00 69.982±20.19 104.118±0.00
ENSMUST00000149289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030752 ENSMUST00000033010 1.738±0.45 2.244±0.37 2.586±0.16 1.582±0.61 0.776±0.00 1.167±0.33 1.564±0.26 1.230±0.15 2.619±1.92 1.668±0.44 3.586±0.54 1.774±0.77 2.548±1.01 1.013±0.49
ENSMUST00000135129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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