C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361439 NSMCE1-001 ENSG00000169189 9606 - 16:27224991-27268794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361439
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361439 17.762±0.00 25.044±0.00 1.073±0.00 11.608±5.66 14.236±11.94 14.983±12.62 7.305±5.44 23.611±15.89 11.142±8.83 18.295±16.93 8.505±8.09 22.286±18.91 32.504±15.09 40.106±12.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V9 CIL_0003V9_0002 CGP 16:27203495-27268794
CIL_0005KN CIL_0005KN_0001 CGP 16:27224991-27364778

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030915 IEA:IDA Smc5-Smc6 complex
GO:0035556 IEA intracellular signal transduction
GO:0043231 IDA intracellular membrane-bounded organelle
GO:2001022 IMP positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033006 Nsmce1-001 protein_coding Mus_musculus 0 872
ENSMUST00000138616 Nsmce1-002 protein_coding Mus_musculus 0 599
ENSMUST00000149289 Nsmce1-003 processed_transcript Mus_musculus 0 405

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