C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3 domain and tetratricopeptide repeats 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169247 SH3TC2 9606 - 5:148923639-149063163 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323829 SH3TC2-004 149001348-149063044 nonsense_mediated_decay
  ENST00000502274 SH3TC2-011 149003953-149008611 protein_coding
  ENST00000503071 SH3TC2-017 149031586-149042747 processed_transcript
  ENST00000504091 SH3TC2-006 149043655-149063058 retained_intron
  ENST00000504517 SH3TC2-009 149003947-149041546 nonsense_mediated_decay
  ENST00000504690 SH3TC2-012 148923639-149063163 nonsense_mediated_decay
  ENST00000510350 SH3TC2-015 148954801-149007111 processed_transcript
  ENST00000510779 SH3TC2-010 149004551-149031616 nonsense_mediated_decay
  ENST00000511307 SH3TC2-003 149026564-149063062 nonsense_mediated_decay
  ENST00000511949 SH3TC2-013 149042720-149063062 retained_intron
  ENST00000512049 SH3TC2-005 149004622-149063089 protein_coding
  ENST00000513340 SH3TC2-018 149028385-149036021 processed_transcript
  ENST00000513604 SH3TC2-007 149025778-149063047 nonsense_mediated_decay
  ENST00000515229 SH3TC2-016 149002828-149008990 processed_transcript
  ENST00000515425 SH3TC2-001 149004621-149063124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323829ENST00000502274ENST00000503071ENST00000504091ENST00000504517ENST00000504690ENST00000510779ENST00000511307ENST00000512049ENST00000513604ENST00000515229ENST00000515425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323829 N/A N/A 0.016±0.00 1.188±0.36 0.068±0.00 0.160±0.00 0.067±0.00 N/A N/A N/A N/A 0.042±0.00 N/A 0.539±0.00
ENST00000502274 N/A N/A 0.022±0.00 N/A 0.065±0.00 0.046±0.00 N/A N/A 0.234±0.00 0.060±0.00 N/A 0.099±0.01 0.555±0.00 1.124±0.00
ENST00000503071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A
ENST00000504091 N/A N/A N/A N/A N/A 0.011±0.00 N/A 0.024±0.00 0.056±0.04 0.045±0.00 0.042±0.00 0.009±0.00 N/A N/A
ENST00000504517 N/A 0.065±0.00 N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A 0.893±0.37 N/A
ENST00000504690 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510779 N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A 0.042±0.00 0.208±0.00 N/A 0.165±0.00 N/A N/A
ENST00000511307 N/A 0.086±0.00 N/A N/A N/A 0.067±0.00 N/A 0.064±0.00 N/A N/A N/A 0.076±0.00 N/A N/A
ENST00000512049 N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513604 0.020±0.00 0.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515229 N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515425 N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A 0.283±0.00 N/A N/A N/A 0.495±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GC CIL_0001GC_0002 CGP 5:148923639-149260542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0008219 IEA cell death
GO:0022011 IEA myelination in peripheral nervous system
GO:0031410 IEA cytoplasmic vesicle
GO:0032287 IEA peripheral nervous system myelin maintenance
GO:0033157 IEA regulation of intracellular protein transport
GO:0055037 IEA recycling endosome
GO:1901184 IEA regulation of ERBB signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076300 sh3tc2 SH3 domain and tetratricopeptide repeats 2 protein_coding Danio_rerio
ENSDARG00000089917 sh3tc2 SH3 domain and tetratricopeptide repeats 2 protein_coding Danio_rerio
ENSMUSG00000045629 Sh3tc2 SH3 domain and tetratricopeptide repeats 2 protein_coding Mus_musculus

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