C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169598 DFFB 9606 + 1:3857267-3885429 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338895 DFFB-201 3857267-3885420 protein_coding
  ENST00000339350 DFFB-004 3857473-3885429 nonsense_mediated_decay
  ENST00000341385 DFFB-202 3857604-3883741 protein_coding
  ENST00000378206 DFFB-007 3857517-3885429 nonsense_mediated_decay
  ENST00000378209 DFFB-001 3857281-3885429 protein_coding
  ENST00000461150 DFFB-009 3883507-3885429 nonsense_mediated_decay
  ENST00000468793 DFFB-002 3857460-3885429 nonsense_mediated_decay
  ENST00000475969 DFFB-006 3857600-3885429 nonsense_mediated_decay
  ENST00000477548 DFFB-003 3857473-3885429 nonsense_mediated_decay
  ENST00000481945 DFFB-008 3867663-3872545 retained_intron
  ENST00000491998 DFFB-005 3857281-3885429 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339350ENST00000341385ENST00000378206ENST00000378209ENST00000461150ENST00000468793ENST00000475969ENST00000481945ENST00000491998
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339350 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 0.190±0.00 N/A
ENST00000341385 1.183±0.00 N/A 0.729±0.00 N/A 0.159±0.00 N/A N/A N/A 0.247±0.00 N/A N/A N/A
ENST00000378206 N/A 0.354±0.00 N/A 0.238±0.00 0.159±0.00 N/A N/A N/A N/A 1.631±0.00 0.952±0.00 0.754±0.00
ENST00000378209 N/A N/A 0.172±0.00 N/A N/A N/A 0.437±0.00 N/A N/A 0.871±0.35 1.411±0.18 N/A
ENST00000461150 N/A 0.525±0.00 N/A N/A N/A 0.654±0.00 N/A 1.104±0.00 0.580±0.00 N/A N/A N/A
ENST00000468793 N/A N/A 1.084±0.00 0.392±0.00 N/A 0.875±0.00 0.439±0.00 0.423±0.00 0.206±0.00 1.180±0.37 N/A 0.996±0.00
ENST00000475969 N/A N/A N/A N/A N/A N/A N/A 0.248±0.00 N/A N/A 0.424±0.23 N/A
ENST00000481945 N/A N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A N/A N/A
ENST00000491998 N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A 0.368±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0004518 IEA nuclease activity
GO:0004536 IEA deoxyribonuclease activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006309 IEA apoptotic DNA fragmentation
GO:0006915 IEA apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0007420 IEA brain development
GO:0016787 IEA hydrolase activity
GO:0019899 IPI enzyme binding
GO:0030263 IDA apoptotic chromosome condensation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009748 dffb DNA fragmentation factor, beta polypeptide (caspase-activated DNase) protein_coding Danio_rerio
ENSMUSG00000029027 Dffb DNA fragmentation factor, beta subunit protein_coding Mus_musculus

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