C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169813 HNRNPF 9606 - 10:43385617-43409166 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337970 HNRNPF-004 43386022-43409166 protein_coding
  ENST00000356053 HNRNPF-005 43385617-43408882 protein_coding
  ENST00000357065 HNRNPF-001 43385617-43407819 protein_coding
  ENST00000443950 HNRNPF-201 43385617-43396831 protein_coding
  ENST00000477108 HNRNPF-003 43387589-43397278 processed_transcript
  ENST00000498176 HNRNPF-002 43387643-43396817 processed_transcript
  ENST00000544000 HNRNPF-202 43385617-43397346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337970ENST00000356053ENST00000357065ENST00000443950ENST00000544000
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337970 52.397±0.00 70.550±0.00 8.927±0.00 14.559±12.15 29.845±2.96 36.462±22.36 14.040±6.84 37.698±17.06 30.342±9.89 42.627±39.43 19.052±13.93 81.568±57.37 42.929±17.50 67.145±7.37
ENST00000356053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.121±0.00 N/A 42.957±0.00
ENST00000357065 N/A N/A N/A 1.853±0.00 5.150±0.00 4.569±0.00 N/A 7.849±1.07 5.737±0.88 3.368±0.00 5.420±0.00 11.607±2.90 N/A N/A
ENST00000443950 N/A N/A 1.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 9.870±0.00 7.112±0.00 N/A
ENST00000544000 N/A N/A N/A N/A N/A N/A N/A 4.076±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000042079 Hnrnpf heterogeneous nuclear ribonucleoprotein F protein_coding Mus_musculus

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