C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337970 HNRNPF-004 ENSG00000169813 9606 - 10:43386022-43409166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337970 52.397±0.00 70.550±0.00 8.927±0.00 14.559±12.15 29.845±2.96 36.462±22.36 14.040±6.84 37.698±17.06 30.342±9.89 42.627±39.43 19.052±13.93 81.568±57.37 42.929±17.50 67.145±7.37

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180020 Hnrnpf-202 protein_coding Mus_musculus 0 2619
ENSMUST00000167182 Hnrnpf-201 protein_coding Mus_musculus 0 2619
ENSMUST00000035493 Hnrnpf-001 protein_coding Mus_musculus 0 2617
ENSMUST00000180341 Hnrnpf-009 protein_coding Mus_musculus 0 2571
ENSMUST00000163168 Hnrnpf-002 protein_coding Mus_musculus 0 2571
ENSMUST00000054664 Gm6430-001 processed_pseudogene Mus_musculus 0 1696
ENSMUST00000118949 Gm12435-001 processed_pseudogene Mus_musculus 0 1367
ENSMUST00000117176 Gm7803-001 processed_pseudogene Mus_musculus 0 1332
ENSMUST00000120433 Gm11793-001 processed_pseudogene Mus_musculus 0 1258
ENSMUST00000177570 Hnrnpf-007 protein_coding Mus_musculus 0 1024
ENSMUST00000179478 Hnrnpf-006 protein_coding Mus_musculus 0 946
ENSMUST00000069304 Hnrnph1-201 protein_coding Mus_musculus 0 715
ENSMUST00000077817 Hnrnph1-006 protein_coding Mus_musculus 0 715
ENSMUST00000109142 Hnrnph1-005 protein_coding Mus_musculus 0 715
ENSMUST00000059297 Hnrnph2-002 protein_coding Mus_musculus 0 575
ENSMUST00000050331 Hnrnph2-004 protein_coding Mus_musculus 0 575
ENSMUST00000113202 Hnrnph2-005 protein_coding Mus_musculus 0 575
ENSMUST00000113203 Hnrnph2-003 protein_coding Mus_musculus 0 575
ENSMUST00000074950 Hnrnph2-001 protein_coding Mus_musculus 0 575
ENSMUST00000134230 Hnrnph1-009 processed_transcript Mus_musculus 0 538
ENSMUST00000122289 Gm14970-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000133435 Hnrnph1-013 processed_transcript Mus_musculus 0 446
ENSMUST00000177918 Hnrnpf-008 protein_coding Mus_musculus 0 315
ENSMUST00000129631 Hnrnph1-012 processed_transcript Mus_musculus 0 315
ENSMUST00000123371 Hnrnph1-008 processed_transcript Mus_musculus 0 315
ENSMUST00000150153 Hnrnph1-011 processed_transcript Mus_musculus 0 315
ENSMUST00000126737 Hnrnph1-007 processed_transcript Mus_musculus 0 315
ENSMUST00000127964 Hnrnph1-010 processed_transcript Mus_musculus 0 252
ENSMUST00000170943 Gm8775-201 protein_coding Mus_musculus 0 250
ENSMUST00000177743 Hnrnpf-004 protein_coding Mus_musculus 0 204
ENSMUST00000179224 Hnrnpf-005 protein_coding Mus_musculus 2e-32 145
ENSMUST00000128220 Hnrnph1-015 processed_transcript Mus_musculus 4e-30 137

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