C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042079 Hnrnpf 10090 + 6:117900324-117925622 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035493 Hnrnpf-001 117906795-117925619 protein_coding
  ENSMUST00000163168 Hnrnpf-002 117906849-117925619 protein_coding
  ENSMUST00000167182 Hnrnpf-201 117900340-117925621 protein_coding
  ENSMUST00000177570 Hnrnpf-007 117917303-117924454 protein_coding
  ENSMUST00000177743 Hnrnpf-004 117900324-117923849 protein_coding
  ENSMUST00000177918 Hnrnpf-008 117906827-117923967 protein_coding
  ENSMUST00000179224 Hnrnpf-005 117906790-117923798 protein_coding
  ENSMUST00000179478 Hnrnpf-006 117916981-117924382 protein_coding
  ENSMUST00000180020 Hnrnpf-202 117917294-117925621 protein_coding
  ENSMUST00000180341 Hnrnpf-009 117923701-117925622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035493ENSMUST00000163168ENSMUST00000179224ENSMUST00000179478ENSMUST00000180020ENSMUST00000180341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035493 10.921±2.25 8.376±0.00 30.137±6.07 30.447±19.91 7.405±4.16 9.403±0.47 4.627±0.67 10.924±4.74 61.754±61.11 12.700±0.00 8.982±2.76 19.445±8.66 59.431±27.65 54.026±3.59
ENSMUST00000163168 6.920±0.33 13.480±1.85 10.495±2.01 N/A 12.368±5.60 9.258±0.56 2.156±0.34 4.439±0.19 4.547±1.01 12.247±3.55 2.177±0.54 10.974±2.07 N/A 13.205±1.73
ENSMUST00000179224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 125.818±20.02
ENSMUST00000179478 N/A N/A N/A N/A 6.541±0.00 N/A N/A N/A 52.600±0.00 N/A 5.168±0.00 36.997±1.33 N/A 56.676±0.00
ENSMUST00000180020 17.670±2.64 6.381±1.74 33.392±4.42 20.423±3.36 13.706±5.65 14.005±5.07 8.901±0.97 16.536±4.12 29.773±25.99 24.264±2.56 3.292±1.12 9.548±0.94 22.414±13.96 N/A
ENSMUST00000180341 N/A N/A N/A 9.140±0.00 N/A 9.971±0.84 N/A N/A N/A N/A N/A 26.403±9.31 54.280±24.26 46.273±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 ISS single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0043484 ISS regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000169813 HNRNPF heterogeneous nuclear ribonucleoprotein F protein_coding Homo_sapiens

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