C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane 4 L six family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169908 TM4SF1 9606 - 3:149369022-149377865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305366 TM4SF1-001 149369022-149377865 protein_coding
  ENST00000472441 TM4SF1-003 149369023-149375712 protein_coding
  ENST00000493298 TM4SF1-005 149371772-149377649 nonsense_mediated_decay
  ENST00000493348 TM4SF1-004 149369498-149377692 nonsense_mediated_decay
  ENST00000622124 TM4SF1-201 149369023-149377742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472441ENST00000493348ENST00000622124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472441 N/A N/A N/A 0.281±0.00 1.072±0.00 0.737±0.00 N/A N/A 0.874±0.00 2.092±0.00 0.303±0.00 2.151±0.00 N/A N/A
ENST00000493348 N/A N/A N/A N/A 4.242±0.00 2.655±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622124 49.850±0.00 69.068±0.00 4.694±0.00 7.281±5.13 33.628±26.10 18.513±13.04 21.559±14.13 14.713±9.95 8.758±0.21 208.744±193.08 6.524±3.04 59.716±50.65 116.302±23.74 33.936±6.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R2 CIL_0002R2_0001 CGP 3:149369022-149503281

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005887 IDA integral component of plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060668 tm4sf18 transmembrane 4 L six family member 18 protein_coding Danio_rerio
ENSMUSG00000027800 Tm4sf1 transmembrane 4 superfamily member 1 protein_coding Mus_musculus

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