C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170185 USP38 9606 + 4:143184917-143223830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307017 USP38-001 143184945-143223830 protein_coding
  ENST00000510377 USP38-003 143184917-143215577 protein_coding
  ENST00000511739 USP38-002 143185694-143223830 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307017ENST00000510377ENST00000511739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307017 3.096±0.00 2.671±0.00 0.759±0.00 2.246±0.51 1.942±0.80 2.066±0.11 1.635±1.03 3.311±1.93 2.418±1.48 1.318±0.32 2.402±1.25 1.530±0.37 2.056±0.41 2.114±0.75
ENST00000510377 0.718±0.00 N/A N/A N/A N/A 1.896±0.00 1.558±0.00 1.207±0.00 1.766±0.00 2.098±0.85 1.369±0.00 0.967±0.17 1.375±0.15 2.177±0.00
ENST00000511739 N/A 0.481±0.00 N/A N/A N/A 0.276±0.00 N/A N/A N/A 0.865±0.00 N/A 0.242±0.00 N/A 0.609±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MQ CIL_0006MQ_0002 CGP 4:143184917-143474568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075798 USP38 ubiquitin specific peptidase 38 protein_coding Danio_rerio
ENSMUSG00000038250 Usp38 ubiquitin specific peptidase 38 protein_coding Mus_musculus

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