C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006MQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075798-ENSDARG00000037018 CGP 7955 1:35183733-35317774
GeneTranscriptPositionBiotype
ENSDARG00000037018 (gab1)
GRB2-associated binding protein 1 		ENSDART00000053806 (gab1-201) 35203452-35317473 protein_coding
ENSDART00000101740 (gab1-202) 35203533-35317772 protein_coding
ENSDART00000140724 (gab1-001) 35202952-35317774 protein_coding
ENSDART00000149806 (gab1-003) 35203019-35223388 processed_transcript
ENSDARG00000075798 (USP38)
ubiquitin specific peptidase 38 		ENSDART00000109678 (USP38-201) 35183733-35196266 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006MQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170185-ENSG00000109458 CGP 9606 4:143184917-143474568
GeneTranscriptPositionBiotype
ENSG00000109458 (GAB1)
GRB2-associated binding protein 1 		ENST00000262994 (GAB1-002) 143336887-143469450 protein_coding
ENST00000262995 (GAB1-001) 143336762-143474568 protein_coding
ENST00000505913 (GAB1-003) 143381945-143469567 protein_coding
ENST00000507070 (GAB1-010) 143439650-143459429 retained_intron
ENST00000507334 (GAB1-012) 143438257-143440016 retained_intron
ENST00000508833 (GAB1-013) 143440173-143466175 processed_transcript
ENST00000509992 (GAB1-006) 143391510-143433716 protein_coding
ENST00000510615 (GAB1-011) 143439673-143459433 retained_intron
ENST00000511109 (GAB1-014) 143465997-143469639 retained_intron
ENST00000511836 (GAB1-007) 143415509-143433680 nonsense_mediated_decay
ENST00000512843 (GAB1-009) 143433491-143469407 protein_coding
ENST00000514639 (GAB1-008) 143337178-143438041 protein_coding
ENST00000515366 (GAB1-005) 143376825-143433577 protein_coding
ENST00000515388 (GAB1-004) 143381948-143395720 processed_transcript
ENSG00000170185 (USP38)
ubiquitin specific peptidase 38 		ENST00000307017 (USP38-001) 143184945-143223830 protein_coding
ENST00000510377 (USP38-003) 143184917-143215577 protein_coding
ENST00000511739 (USP38-002) 143185694-143223830 nonsense_mediated_decay
ENSG00000228981 (RP11-364L4.1)
 ENST00000475555 (RP11-364L4.1-001) 143349275-143350117 processed_pseudogene
ENSG00000243175 (RP11-58H15.1)
 ENST00000465940 (RP11-58H15.1-001) 143425052-143425920 transcribed_processed_pseudogene
ENST00000494591 (RP11-58H15.1-002) 143424753-143426013 processed_transcript
ENSG00000250969 (RP11-364L4.3)
 ENST00000512715 (RP11-364L4.3-001) 143286293-143329858 lincRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MQ_0001ENSDARG00000037018ENSDART00000053806ENSDART00000101740ENSDART00000140724ENSDART00000149806ENSDARG00000075798ENSDART00000109678CIL_0006MQ_0002ENSG00000109458ENST00000262994ENST00000262995ENST00000505913ENST00000507070ENST00000507334ENST00000508833ENST00000509992ENST00000510615ENST00000511109ENST00000511836ENST00000512843ENST00000514639ENST00000515366ENST00000515388ENSG00000170185ENST00000307017ENST00000510377ENST00000511739ENSG00000228981ENST00000475555ENSG00000243175ENST00000465940ENST00000494591ENSG00000250969ENST00000512715
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MQ_0001ENSDARG00000037018ENSDART00000053806ENSDART00000101740ENSDART00000140724ENSDARG00000075798ENSDART00000109678CIL_0006MQ_0002ENSG00000109458ENST00000262994ENST00000262995ENST00000505913ENST00000507334ENSG00000170185ENST00000307017ENST00000510377ENST00000511739ENSG00000228981ENST00000475555ENSG00000243175ENST00000465940ENST00000494591ENSG00000250969ENST00000512715
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000037018 ENSDART00000053806 N/A N/A N/A 2.139±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000101740 N/A N/A N/A 2.450±0.00 N/A N/A 9.797±0.71 1.639±0.00 0.150±0.00 N/A 8.400±0.00 N/A N/A N/A
ENSDART00000140724 N/A N/A N/A 3.018±1.18 N/A N/A 3.384±0.82 1.855±0.00 0.104±0.00 N/A 1.299±0.00 N/A N/A N/A
ENSDART00000149806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075798 ENSDART00000109678 N/A N/A N/A 2.753±0.69 N/A N/A 1.698±0.00 0.605±0.00 N/A N/A 0.452±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109458 ENST00000262994 1.715±0.00 N/A 2.236±0.00 7.564±0.00 2.492±0.25 4.440±0.55 4.971±0.02 2.537±0.86 2.001±0.00 5.339±0.76 N/A 3.722±0.12 2.078±0.00 4.519±0.00
ENST00000262995 1.678±0.00 0.876±0.00 1.538±0.00 2.630±0.81 0.769±0.00 N/A N/A 0.399±0.01 1.649±0.00 N/A N/A 1.050±0.65 2.201±0.48 N/A
ENST00000505913 N/A N/A N/A 5.624±0.00 N/A N/A N/A N/A 4.108±0.00 N/A 2.141±0.00 N/A 1.784±0.00 N/A
ENST00000507070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507334 N/A N/A 28.809±0.00 N/A N/A 24.897±0.00 N/A N/A N/A 34.855±0.00 N/A N/A N/A N/A
ENST00000508833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170185 ENST00000307017 3.096±0.00 2.671±0.00 0.759±0.00 2.246±0.51 1.942±0.80 2.066±0.11 1.635±1.03 3.311±1.93 2.418±1.48 1.318±0.32 2.402±1.25 1.530±0.37 2.056±0.41 2.114±0.75
ENST00000510377 0.718±0.00 N/A N/A N/A N/A 1.896±0.00 1.558±0.00 1.207±0.00 1.766±0.00 2.098±0.85 1.369±0.00 0.967±0.17 1.375±0.15 2.177±0.00
ENST00000511739 N/A 0.481±0.00 N/A N/A N/A 0.276±0.00 N/A N/A N/A 0.865±0.00 N/A 0.242±0.00 N/A 0.609±0.00
ENSG00000228981 ENST00000475555 N/A 0.811±0.00 N/A 0.067±0.00 0.316±0.00 0.254±0.00 0.471±0.39 0.124±0.03 N/A N/A 0.872±0.00 0.960±0.18 0.708±0.00 0.243±0.22
ENSG00000243175 ENST00000465940 N/A N/A N/A 0.486±0.00 N/A N/A N/A N/A N/A 0.355±0.00 N/A 0.099±0.03 0.135±0.00 N/A
ENST00000494591 0.216±0.00 0.506±0.00 0.318±0.00 0.185±0.03 0.104±0.00 0.238±0.00 0.184±0.00 0.242±0.00 0.756±0.62 0.611±0.40 0.130±0.00 0.367±0.31 0.234±0.00 0.443±0.11
ENSG00000250969 ENST00000512715 0.098±0.00 0.041±0.00 N/A 0.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.02

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