C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GABA(A) receptor-associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170296 GABARAP 9606 - 17:7240014-7242770 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302386 GABARAP-001 7240014-7242770 protein_coding
  ENST00000570856 GABARAP-006 7240574-7242358 nonsense_mediated_decay
  ENST00000571129 GABARAP-004 7240628-7242156 protein_coding
  ENST00000571253 GABARAP-003 7240854-7242252 protein_coding
  ENST00000573928 GABARAP-002 7241271-7242447 protein_coding
  ENST00000577035 GABARAP-005 7240408-7241819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302386ENST00000570856ENST00000571129ENST00000573928ENST00000577035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.665±0.00 N/A N/A
ENST00000570856 N/A 130.437±0.00 N/A N/A N/A N/A N/A 240.707±0.00 93.867±0.00 N/A N/A 205.064±0.00 N/A N/A
ENST00000571129 111.550±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573928 N/A N/A N/A N/A N/A N/A N/A N/A 15.394±0.00 N/A N/A N/A 181.664±0.00 321.579±0.00
ENST00000577035 N/A N/A 59.990±0.00 87.394±0.00 34.834±0.00 52.906±0.00 80.024±48.46 78.953±0.00 39.077±27.86 88.138±66.02 108.950±18.58 181.713±150.52 429.958±31.79 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000421 IDA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005776 IDA autophagic vacuole
GO:0005790 IEA smooth endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005874 IEA microtubule
GO:0005875 IEA microtubule associated complex
GO:0005886 IEA plasma membrane
GO:0005930 ISS axoneme
GO:0006605 TAS protein targeting
GO:0006914 IEA autophagy
GO:0007268 TAS synaptic transmission
GO:0008017 IEA microtubule binding
GO:0008625 IDA extrinsic apoptotic signaling pathway via death domain receptors
GO:0015031 IEA protein transport
GO:0015629 IEA actin cytoskeleton
GO:0031410 IEA cytoplasmic vesicle
GO:0044297 IEA cell body
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048487 IDA beta-tubulin binding
GO:0050811 IPI GABA receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035557 gabarapa GABA(A) receptor-associated protein a protein_coding Danio_rerio
ENSDARG00000052082 GABARAP (2 of 2) GABA(A) receptor-associated protein protein_coding Danio_rerio
ENSMUSG00000018567 Gabarap gamma-aminobutyric acid receptor associated protein protein_coding Mus_musculus

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