C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid receptor associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018567 Gabarap 10090 + 11:69991143-69994951 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018711 Gabarap-001 69991143-69994951 protein_coding
  ENSMUST00000108592 Gabarap-004 69991639-69994940 protein_coding
  ENSMUST00000139007 Gabarap-003 69991807-69992601 processed_transcript
  ENSMUST00000144443 Gabarap-002 69991684-69994935 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018711ENSMUST00000108592ENSMUST00000144443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018711 41.178±14.87 9.288±0.38 68.835±2.69 39.563±23.08 29.826±12.42 17.506±3.73 25.499±3.77 34.951±4.15 34.810±18.33 17.654±1.33 50.709±4.06 23.856±7.49 42.822±20.25 58.351±23.92
ENSMUST00000108592 133.797±24.52 187.435±41.65 98.028±32.14 72.169±43.97 221.531±87.78 122.999±26.90 150.512±6.23 298.477±71.62 137.928±75.90 189.013±48.04 52.793±6.11 167.576±70.57 83.155±44.47 190.881±93.06
ENSMUST00000144443 92.301±25.08 20.467±3.83 47.633±0.79 70.003±35.44 66.356±37.01 35.678±11.24 35.262±2.54 74.104±15.97 37.456±10.57 55.802±8.09 16.471±0.00 76.280±24.31 31.129±10.35 51.655±14.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000421 IEA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005776 ISS autophagic vacuole
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0005886 IDA plasma membrane
GO:0005930 IDA axoneme
GO:0006914 IEA autophagy
GO:0008017 IDA microtubule binding
GO:0008625 ISS extrinsic apoptotic signaling pathway via death domain receptors
GO:0015031 IEA protein transport
GO:0015629 IDA actin cytoskeleton
GO:0031410 IEA cytoplasmic vesicle
GO:0044297 IEA cell body
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048487 IEA beta-tubulin binding
GO:0050811 IEA GABA receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035557 gabarapa GABA(A) receptor-associated protein a protein_coding Danio_rerio
ENSDARG00000052082 GABARAP (2 of 2) GABA(A) receptor-associated protein protein_coding Danio_rerio
ENSG00000170296 GABARAP GABA(A) receptor-associated protein protein_coding Homo_sapiens

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