C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane emp24-like trafficking protein 10 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170348 TMED10 9606 - 14:75131470-75176631 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303575 TMED10-001 75131470-75176631 protein_coding
  ENST00000555036 TMED10-006 75134440-75147760 retained_intron
  ENST00000555085 TMED10-007 75147555-75176612 retained_intron
  ENST00000555873 TMED10-003 75134500-75176597 nonsense_mediated_decay
  ENST00000556969 TMED10-005 75133938-75147781 retained_intron
  ENST00000557670 TMED10-004 75134356-75147897 processed_transcript
  ENST00000622441 TMED10-008 75175921-75176532 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303575ENST00000555085ENST00000556969ENST00000557670
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303575 41.416±0.00 26.679±0.00 7.556±0.00 18.538±6.85 34.602±5.49 28.379±11.34 17.819±9.15 30.251±6.67 27.484±6.42 27.321±6.66 24.369±18.71 39.455±14.84 38.436±7.80 34.795±9.93
ENST00000555085 N/A N/A 14.418±0.00 22.543±0.00 40.410±0.00 27.719±0.00 20.572±0.00 47.132±0.00 N/A 30.997±0.00 20.435±0.00 26.627±0.00 N/A N/A
ENST00000556969 N/A N/A 4.187±0.00 N/A N/A 9.526±0.00 N/A 10.970±0.00 N/A N/A N/A 10.260±0.00 N/A N/A
ENST00000557670 N/A 28.315±0.00 N/A 29.004±0.00 31.759±0.00 N/A 30.164±0.00 44.382±0.00 54.081±0.00 35.952±0.00 4.670±0.00 55.498±0.00 73.293±22.44 50.330±7.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0001 VISTA 14:74936670-75538350
CIL_00085H CIL_00085H_0001 VISTA 14:74957721-75560295
CIL_0007PT CIL_0007PT_0001 VISTA 14:74957738-75560035
CIL_0003G5 CIL_0003G5_0001 CGP 14:75079353-75176631
CIL_0004K7 CIL_0004K7_0002 CGP 14:75131470-75282230

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0001822 IEA kidney development
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0005801 ISS cis-Golgi network
GO:0005886 ISS plasma membrane
GO:0006810 IEA transport
GO:0006886 IDA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0006890 ISS retrograde vesicle-mediated transport, Golgi to ER
GO:0007030 IEA Golgi organization
GO:0016021 ISS:IEA integral component of membrane
GO:0019905 IPI syntaxin binding
GO:0030137 ISS COPI-coated vesicle
GO:0030140 ISS trans-Golgi network transport vesicle
GO:0030667 ISS secretory granule membrane
GO:0032403 IEA protein complex binding
GO:0035459 TAS cargo loading into vesicle
GO:0035964 IDA COPI-coated vesicle budding
GO:0042589 ISS zymogen granule membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043279 IEA response to alkaloid
GO:0045055 ISS regulated secretory pathway
GO:0048199 ISS vesicle targeting, to, from or within Golgi
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0048208 TAS COPII vesicle coating
GO:0051259 IEA protein oligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:0070765 IDA gamma-secretase complex
GO:1902003 IMP regulation of beta-amyloid formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041391 tmed10 transmembrane emp24-like trafficking protein 10 (yeast) protein_coding Danio_rerio
ENSMUSG00000021248 Tmed10 transmembrane emp24-like trafficking protein 10 (yeast) protein_coding Mus_musculus

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